Motif IL_28572.1 Version IL_28572.1 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_021 | 1FJG | 0.0988 | 3 | A | SSU rRNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | cSW | tWH | tHS | ntWW | cWW | |
| 2 | IL_2AW7_028 | 2AW7 | 0.0000 | 3 | A | 16S ribosomal RNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | ncSW | tWH | ntHS | ntWW | cWW | |
| 3 | IL_3U5F_032 | 3U5F | 0.2473 | 3 | 6 | 18S rRNA | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | C | 583 | cWW | cSW | tWH | tHS | cWW | ||
| 4 | IL_2XZM_031 | 2XZM | 0.2977 | 3 | A | 18S RRNA | G | 556 | U | 557 | G | 558 | C | 559 | C | 560 | A | 561 | G | 562 | * | C | 569 | G | 570 | G | 571 | U | 572 | A | 574 | C | 577 | cWW | cSW | tHS | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGCCAG*CGGUAAUAC | 2 |
| GUGCCAG*CGGUAAUUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCCA*GGUAAUA | 2 |
| UGCCA*GGUAAUU | 2 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_28572.1 | Only in the parent motif |
|---|---|---|---|
| IL_22907.1 Compare | IL_2XZM_031 | IL_3U5F_032, IL_2AW7_028, IL_1FJG_021 | |
| IL_56170.1 Compare | IL_1FJG_021 | IL_2XZM_031, IL_3U5F_032, IL_2AW7_028 | |
| IL_40073.1 Compare | IL_2AW7_028 | IL_2XZM_031, IL_3U5F_032, IL_1FJG_021 |
Children motifs
| Child motif | Common motif instances | Only in IL_28572.1 | Only in the child motif |
|---|---|---|---|
| IL_28572.2 Compare | IL_3U5F_032, IL_2AW7_028, IL_1FJG_021 | IL_2XZM_031 | IL_4BPP_032 |
- Annotations
- Basepair signature
- cWW-tWH-cSW-L-R-R-L-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.17 | Max 0.30
Coloring options: