Motif IL_29198.2 Version IL_29198.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-5 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_270 | 5J7L | 0.2081 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | DA | LSU rRNA | G | 856 | G | 857 | G | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | U | 919 | A | 920 | C | 921 | cWW | cWW | cWB | cSH | tWH | tHS | cWW |
| 2 | IL_4WF9_031 | 4WF9 | 0.1830 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | X | LSU rRNA | G | 901 | A | 902 | G | 903 | G | 904 | U | 905 | A | 906 | G | 907 | * | C | 960 | G | 961 | A | 962 | A | 963 | U | 964 | G | 965 | C | 966 | cWW | cWW | ncWB | cSH | tWH | tHS | cWW |
| 3 | IL_8P9A_266 | 8P9A | 0.0000 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge (H) | AR | LSU rRNA | G | 991 | A | 992 | G | 993 | G | 994 | U | 995 | A | 996 | A | 997 | * | U | 1052 | A | 1053 | A | 1054 | A | 1055 | U | 1056 | A | 1057 | U | 1058 | cWW | cwW | cWB | cSH | tWH | tHS | cWW |
| 4 | IL_8CRE_041 | 8CRE | 0.0674 | 0 | 1 | LSU rRNA | G | 987 | A | 988 | G | 989 | G | 990 | U | 991 | A | 992 | A | 993 | * | U | 1048 | A | 1049 | A | 1050 | A | 1051 | U | 1052 | A | 1053 | U | 1054 | cWW | ncWw | cWB | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGGUAA*UAAAUAU | 2 |
| GGGGUAG*CGAAUAC | 1 |
| GAGGUAG*CGAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGUA*AAAUA | 2 |
| GGGUA*GAAUA | 1 |
| AGGUA*GAAUG | 1 |
- Annotations
-
- 7x7 Sarcin-Ricin with intercalated A; G-bulge (2)
- (1)
- 7x7 Sarcin-Ricin with intercalated A; G-bulge (H) (1)
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.23
Coloring options: