Motif IL_29346.1 Version IL_29346.1 of this group appears in releases 3.77 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_001 | 3PDR | 0.7027 | 1 | X | M-box riboswitch (ykoK leader) | C | 163 | G | 164 | A | 165 | U | 167 | G | 168 | * | C | 21 | G | 22 | cWW | cWW | |
| 2 | IL_5J7L_036 | 5J7L | 0.0778 | 0 | Left turn | AA | SSU rRNA | G | 774 | G | 775 | G | 776 | A | 777 | G | 778 | * | U | 804 | C | 805 | cWW | cWW |
| 3 | IL_4LFB_032 | 4LFB | 0.0000 | 0 | Left turn | A | SSU rRNA | G | 774 | G | 775 | G | 776 | A | 777 | G | 778 | * | U | 804 | C | 805 | cWW | cWW |
| 4 | IL_6CZR_144 | 6CZR | 0.1162 | 0 | Left turn | 1a | SSU rRNA | G | 758 | G | 759 | G | 760 | A | 761 | G | 762 | * | U | 788 | C | 789 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAG*UC | 3 |
| CGAUUG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA* | 3 |
| GAUU* | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Left turn (3)
- (1)
- Basepair signature
- cWW-L-cWW-L-L
- Heat map statistics
- Min 0.08 | Avg 0.31 | Max 0.73
Coloring options: