#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_3BNL_0023BNL0.68251A+BA site of bacterial ribosomeC6A7C8*G15A17G18cWWcwWcWW
2 IL_2GDI_0012GDI0.57111XTPP riboswitchG18G19U20*A45A47C48cWWcWWcWW
3 IL_2GDI_0052GDI0.00001YTPP riboswitchG18G19U20*A45A47C48cWWcWWcWW
4 IL_3O30_0313O300.04597118S ribosomal RNAG586C587U588*A550U558C559cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGU*AUAC2
CAC*GAAG1
GCU*AGGGCAAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
G*UA2
A*AA1
C*GGGCAAGU1

Release history

Release0.5
Date2011-12-08
StatusNew id, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_30092.1Only in the parent motif
IL_33923.2
Compare
IL_2GDI_005, IL_2GDI_001IL_3BNL_002, IL_3O30_031IL_2ZJR_018, IL_1S72_029, IL_3F1H_021, IL_1S72_003, IL_2QBZ_004, IL_3F1H_042, IL_1MMS_002, IL_2ZJR_039, IL_1MMS_004
IL_90629.2
Compare
IL_3BNL_002IL_2GDI_005, IL_2GDI_001, IL_3O30_031IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1O9M_003, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_1YZ9_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_2ZJR_042, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_2FQN_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_1MWL_001, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_3MEI_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002

Children motifs

Child motifCommon motif instancesOnly in IL_30092.1Only in the child motif
IL_78157.1
Compare
IL_2GDI_005, IL_2GDI_001, IL_3BNL_002IL_3O30_031IL_2Y9B_005, IL_2Y9B_008
Annotations
  • (4)
  • Basepair signature
    Heat map statistics
    Min 0.05 | Avg 0.38 | Max 0.69
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