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Motif IL_30621.1 Version IL_30621.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-62-73-64-5
1 IL_4K27_0034K270.64630Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC41C42U43G44*C12C13U14G15cWWcWWcWWcWW
2 IL_4K27_0024K270.63400Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC45C46U47G48*C8C9U10G11cWWcWWcWWcWW
3 IL_3NDB_0013NDB0.43260Self complementaryM SRP RNAC253G254G255G256*C125U126C127G128cWWncWScWWncWW
4 IL_1D4R_0011D4R0.36470Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G4A5C6C7*G22A23C24C25cWWcWWcWWacWW
5 IL_4WF9_1094WF90.39700Tandem non-canonical cWW pairsY 5S rRNAC110A111G112G113*C2U3G4G5cWWncHWncWWacWW
6 IL_1JID_0021JID0.43030Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG156A157C158C159*G138A139C140C141cWWcWWcWWcWW
7 IL_1D4R_0031D4R0.41400Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G4A5C6C7*G22A23C24C25cWWcWWcWWcWW
8 IL_1MFQ_0041MFQ0.38670Tandem non-canonical cWW pairsA SRP RNAG156A157C158C159*G138A139C140C141cWWncWWncWWcWW
9 IL_3WBM_0023WBM0.36200Tandem non-canonical cWW pairsY+XRNA (25-MER)G14A15C16U17*A10C11C12C13cWWncWWncBWcWW
10 IL_3WBM_0033WBM0.39680Tandem non-canonical cWW pairsX+YRNA (25-MER)G14A15C16U17*A10C11C12C13cWWcWWncBWcWW
11 IL_7VYX_0027VYX0.44490CsgRNAC13U14U15C16*G50G51U52G53ncWWncWwncWWacWW
12 IL_1L9A_0021L9A0.41080Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG120U121U122C123*G227A228U229C230cWWncWwncWWcWW
13 IL_4EYA_0084EYA0.41900Tandem non-canonical cWW pairsk+lRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncWwncWwcWW
14 IL_4EYA_0104EYA0.48050Tandem non-canonical cWW pairsn+mRNA (12-mer)C6U7U8G9*C6U7U8G9ncWWncWwncWwcWW
15 IL_361D_001361D0.45990Tandem non-canonical cWW pairsBRNA (20-mer)C93C94U95G96*U80G81G82G83cWWncWWacWW
16 IL_4V88_4384V880.48540Tandem non-canonical cWW pairsA6 SSU rRNAG1041G1042A1043U1044*G1074C1075A1076C1077cWWcWWncWBcWW
17 IL_5J7L_2835J7L0.36230Tandem non-canonical cWW pairsDA LSU rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
18 IL_5TBW_1005TBW0.38450Tandem non-canonical cWW pairs1 LSU rRNAU2735A2736C2737A2738*U2718U2719G2720A2721cWWcWWcWW
19 IL_4V88_4314V880.36191Tandem non-canonical cWW pairsA6 SSU rRNAC874G875G877G878*C950A951A952G953cWWcWWcWWcWW
20 IL_6XJQ_0026XJQ0.00001ASelf-alkylating ribozyme (58-MER)C48G49A50U51*A10G11A13G14cWWcWScWWcWW
21 IL_4V88_4294V880.29811Tandem non-canonical cWW pairsA6 SSU rRNAG867G868A869C870*G957U958U960U961cWWncWWcWW
22 IL_6JDV_0026JDV0.39380Tandem non-canonical cWW pairsBsgRNAC35C36U37U38*A63C64C65G66cWWcWWcWW
23 IL_5EW4_0025EW40.44890Tandem non-canonical cWW pairsB+ARNA (22-mer)C8C9C10G11*C14C15C16G17cWWncBWncBWcWW
24 IL_7A0S_0407A0S0.47520Tandem non-canonical cWW pairsX LSU rRNAA1175U1176U1177C1178*G1196U1197C1198U1199cWWcWWncWwcWW
25 IL_3TZR_0033TZR0.53210Tandem non-canonical cWW pairsA+BRNA (20-mer) + RNA (16-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
26 IL_2PN3_0042PN30.55730Tandem non-canonical cWW pairsA+BRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
27 IL_5EW4_0015EW40.56620Tandem non-canonical cWW pairsB+ARNA (22-mer)C14C15C16G17*C8C9C10G11cWWcWwcBWcWW
28 IL_205D_001205D0.53280Tandem non-canonical cWW pairsA+BRNA (12-mer)U5U6U7G8*U17U18U19G20cWWcwWcWwcWW
29 IL_4EYA_0034EYA0.58300Tandem non-canonical cWW pairsf+eRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
30 IL_4V88_4734V880.52240Tandem non-canonical cWW pairsA6 SSU rRNAC1675U1676C1677A1678*U1723U1724U1725G1726cWWcwWcWW
31 IL_5TBW_0415TBW0.51710Tandem non-canonical cWW pairs1 LSU rRNAU1041U1042C1043U1044*A1006U1007U1008A1009cWWcwWcWW
32 IL_4V88_3914V880.54420Tandem non-canonical cWW pairsA6 SSU rRNAU302U303U304C305*G109U110U111A112cWWcwWcWwcWW
33 IL_5TBW_1295TBW0.54180Tandem non-canonical cWW pairs1 LSU rRNAU3300U3301U3302G3303*C3311U3312U3313A3314cWWcwWcWwcWW
34 IL_8ID2_0018ID20.48680Tandem non-canonical cWW pairsCRNA (24-mer)A5C6U7G8*C17U18U19U20cWWncWWcWWcWwcWW
35 IL_3R2D_0023R2D0.53270Tandem non-canonical cWW pairsS+RRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
36 IL_6MWN_0056MWN0.52800Tandem non-canonical cWW pairsB IRESA643U644U645G646*C661U662U663U664cWWcwWcWwcWW
37 IL_5TBW_1285TBW0.52390Tandem non-canonical cWW pairs1 LSU rRNAC3249U3250U3251G3252*C3235U3236U3237G3238cWWcwWcWwcWW
38 IL_280D_001280D0.52870Tandem non-canonical cWW pairsB+ARNA (12-mer)C17U18U19G20*C5U6U7G8cWWcwWcWwcWW
39 IL_4UYK_0034UYK0.48870Tandem non-canonical cWW pairsRSRP RNAG81U82U83C84*G117U118U119C120cWWcwWcWwcWW
40 IL_6JDV_0016JDV0.49380Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G66U67U68G69cWWcwWncWScWW
41 IL_8HNT_0018HNT0.50940Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G54U55U56G57cWWcwWncWScWW
42 IL_5C5W_0035C5W0.43280Tandem non-canonical cWW pairsARNA (19-mer)C15U16A17G18*C2||||5_556C3||||5_556U4||||5_556G5||||5_556cWWcwWcWWcWW
43 IL_5C5W_0015C5W0.43280Tandem non-canonical cWW pairsARNA (19-mer)C15||||5_556U16||||5_556A17||||5_556G18||||5_556*C2C3U4G5cWWcwWcWWcWW
44 IL_402D_001402D0.40640Tandem non-canonical cWW pairsA+BRNA (8-mer)C103C104A105G106*C111C112A113G114cWWcWWcWWcWW
45 IL_4V88_4614V880.54150Tandem non-canonical cWW pairsA6 SSU rRNAC1495U1496U1497G1498*C1509U1510U1511G1512cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG7
GACC*GACC4
CCUG*CCUG2
GACU*ACCC2
CCCG*CCCG2
CUUC*GUCG2
CUCC*GUUG2
CUAG*CCUG2
CGGG*CUCG1
CAGG*CUGG1
CUUC*GGUG1
GUUC*GAUC1
CCUG*UGGG1
GGAU*GCAC1
GAAG*CGGC1
UACA*UUGA1
CGGGG*CAAG1
CGAU*AGAAG1
GGAC*GUUUU1
CCUU*ACCG1
AUUC*GUCU1
UUUG*UUUG1
CUCA*UUUG1
UUCU*AUUA1
UUUC*GUUA1
UUUG*CUUA1
ACUG*CUUU1
AUUG*CUUU1
GUUC*GUUC1
CCAG*CCAG1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU12
AC*AC4
UC*UU4
UU*UC3
CU*CU2
AC*CC2
CC*CC2
UA*CU2
GG*UC1
AG*UG1
UU*GU1
UU*AU1
CU*GG1
GA*CA1
AA*GG1
AC*UG1
GGG*AA1
GA*GAA1
GA*UUU1
CU*CC1
CU*UU1
CA*CA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (42)
  • (2)
  • Self complementary (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.40 | Max 0.75
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