Motif IL_30840.2 Version IL_30840.2 of this group appears in releases 1.5 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-10 | 4-7 | 4-9 | 5-8 | 6-7 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4A1B_014 | 4A1B | 0.9338 | 1 | 1 | 26S RRNA | G | 430 | A | 431 | G | 432 | A | 434 | A | 435 | U | 436 | * | A | 646 | U | 647 | G | 648 | G | 649 | C | 650 | cWW | ncWW | ntSH | ncWW | cWW | ||
2 | IL_4BPP_010 | 4BPP | 0.0000 | 0 | A | 18S RRNA | U | 113 | U | 114 | A | 115 | U | 116 | U | 117 | U | 118 | * | A | 286 | U | 287 | C | 288 | U | 289 | A | 290 | cWW | cwW | ntHS | cWw | cWW | ||
3 | IL_3U5F_010 | 3U5F | 0.2895 | 0 | 6 | 18S rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ntHS | cWw | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAGCAAU*AUGGC | 1 |
UUAUUU*AUCUA | 1 |
UUAUUU*AUUCA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGCAA*UGG | 1 |
UAUU*UCU | 1 |
UAUU*UUC | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_30840.2 | Only in the parent motif |
---|---|---|---|
IL_30840.1 Compare | IL_3U5F_010, IL_4A1B_014 | IL_4BPP_010 | IL_2XZM_010 |
Children motifs
Child motif | Common motif instances | Only in IL_30840.2 | Only in the child motif |
---|---|---|---|
IL_30840.3 Compare | IL_3U5F_010, IL_4A1B_014, IL_4BPP_010 | IL_4CUX_010 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-L-cWW-cWW-cWW
- Heat map statistics
- Min 0.29 | Avg 0.48 | Max 0.94
Coloring options: