#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-103-104-74-95-86-7
1 IL_4A1B_0144A1B0.93381126S RRNAG430A431G432A434A435U436*A646U647G648G649C650cWWncWWntSHncWWcWW
2 IL_4BPP_0104BPP0.00000A18S RRNAU113U114A115U116U117U118*A286U287C288U289A290cWWcwWntHScWwcWW
3 IL_3U5F_0103U5F0.28950618S rRNAU117U118A119U120U121U122*A295U296U297C298A299cWWntHScWwcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGCAAU*AUGGC1
UUAUUU*AUCUA1
UUAUUU*AUUCA1
Non-Watson-Crick part of the motif
SequenceCounts
AGCAA*UGG1
UAUU*UCU1
UAUU*UUC1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_30840.2Only in the parent motif
IL_30840.1
Compare
IL_3U5F_010, IL_4A1B_014IL_4BPP_010IL_2XZM_010

Children motifs

Child motifCommon motif instancesOnly in IL_30840.2Only in the child motif
IL_30840.3
Compare
IL_3U5F_010, IL_4A1B_014, IL_4BPP_010IL_4CUX_010
Annotations
  • (3)
  • Basepair signature
    cWW-cWW-L-cWW-cWW-cWW
    Heat map statistics
    Min 0.29 | Avg 0.48 | Max 0.94
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