#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 8 91-92-72-83-63-74-5
1 IL_3FS0_0013FS00.40730UAA/GAN relatedA+BRNA (10-mer) + RNA (11-mer)U46G47A48G49*C-1G1G2A3A4cWWnthHtHScWW
2 IL_4A1B_1204A1B0.36552126S RRNAU3043A3044A3046A3048*U3073G3074A3075A3076G3077cWWtHScWW
3 IL_3FTM_0013FTM0.31210A+BRNA (11-mer) + RNA (12-mer)U46G47A48G49*C-1G1G2A3A4cWWntHScWW
4 IL_4FAW_0104FAW0.00000AGroup II catalytic intron D1-D4-1U172G173A174G175*C190A191A192A193G194cWWtSHtHScWW
5 IL_4A1B_0264A1B0.14680126S RRNAU571G572A573G574*C594A595A596A597A598cWWntSHtHScWW
6 IL_4A1B_0224A1B0.25130126S RRNAU499G500A501G502*C475A476G477A478G479cWWtSHntHScWW
7 IL_1X8W_0021X8W0.27010ATetrahymena ribozyme RNAU205A206A207C208*G112A113A114A115G116ncWWtHScWW
8 IL_1GID_0101GID0.27710BP4-P6 RNA RIBOZYME DOMAINU205A206A207C208*G112A113A114A115G116cWWtSHtHScWW
9 IL_1GID_0031GID0.30050AP4-P6 RNA RIBOZYME DOMAINU205A206A207C208*G112A113A114A115G116ncWWtSHtHScWW
10 IL_3LOA_0013LOA0.68050UAA/GAN variationA+BRNA (21-mer) + RNA (23-mer)G1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWncWWcWW
11 IL_3BNT_0023BNT0.77420Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6A7C8C9*G14||||4_665C15||||4_665A16||||4_665A17||||4_665G18||||4_665cWWcwWncBWcWW
12 IL_3BNT_0053BNT0.77430Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6||||4_665A7||||4_665C8||||4_665C9||||4_665*G14C15A16A17G18cWWcwWncBWcWW
13 IL_3CUN_0013CUN0.77951CRNA (92-MER)C22A23G24G25*U44A45U47G48G49cWWcWWcWBcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAAC*GAAAG3
UGAG*CGGAA2
CACC*GCAAG2
UAAAUA*UGAAG1
UGAG*CAAAG1
UGAG*CAAAA1
UGAG*CAGAG1
GCCC*GUAAC1
CAGG*UAUUGG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*AAA3
GA*GGA2
GA*AAA2
AC*CAA2
AAAU*GAA1
GA*AGA1
CC*UAA1
AG*AUUG1
Annotations
  • (9)
  • Tandem non-canonical cWW pairs (2)
  • UAA/GAN related (1)
  • UAA/GAN variation (1)
  • Basepair signature
    cWW-cWW-tSH-tHS-cWW
    Heat map statistics
    Min 0.00 | Avg 0.51 | Max 0.94
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