Motif IL_32261.1 Version IL_32261.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | 3-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3U5F_021 | 3U5F | 0.1361 | 1 | 6 | 18S rRNA | G | 363 | G | 364 | G | 365 | * | C | 376 | G | 377 | A | 378 | U | 379 | C | 381 | cWW | cWW | |||
2 | IL_4BPP_019 | 4BPP | 0.0000 | 1 | A | 18S RRNA | G | 354 | A | 355 | G | 356 | * | C | 367 | G | 368 | A | 369 | U | 370 | C | 372 | cWW | cWW | |||
3 | IL_1FJG_063 | 1FJG | 0.8818 | 1 | A | SSU rRNA | C | 1459 | A | 1460 | G | 1461 | * | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | cWW | tHS | cWW | ||
4 | IL_4GXY_009 | 4GXY | 0.9424 | 0 | Major groove minor groove platform with extra cWW | A | Adenosylcobalamin riboswitch | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGG*CGAUUC | 1 |
GAG*CGAUUC | 1 |
CAG*CGGGAG | 1 |
CAC*GGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*GAUU | 1 |
A*GAUU | 1 |
A*GGGA | 1 |
A*GAA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | > 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_32261.1 | Only in the parent motif |
---|---|---|---|
IL_46034.3 Compare | IL_3U5F_021, IL_4BPP_019 | IL_1FJG_063, IL_4GXY_009 | |
IL_25380.1 Compare | IL_4GXY_009 | IL_1FJG_063, IL_3U5F_021, IL_4BPP_019 | IL_4GMA_007, IL_2QBG_093, IL_2XXA_009, IL_4IOA_088, IL_4BPP_071 |
IL_95150.6 Compare | IL_1FJG_063 | IL_3U5F_021, IL_4BPP_019, IL_4GXY_009 | IL_3OWZ_006, IL_3OWZ_002 |
Children motifs
Child motif | Common motif instances | Only in IL_32261.1 | Only in the child motif |
---|---|---|---|
IL_32261.2 Compare | IL_1FJG_063, IL_3U5F_021, IL_4BPP_019 | IL_4GXY_009 | IL_4CUX_021 |
IL_74856.2 Compare | IL_4GXY_009 | IL_1FJG_063, IL_3U5F_021, IL_4BPP_019 | IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076 |
- Annotations
-
- (3)
- Major groove minor groove platform with extra cWW (1)
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.54 | Max 0.96
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