#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6 7 81-82-53-43-6
1 IL_3U5F_0213U5F0.13611618S rRNAG363G364G365*C376G377A378U379C381cWWcWW
2 IL_4BPP_0194BPP0.00001A18S RRNAG354A355G356*C367G368A369U370C372cWWcWW
3 IL_1FJG_0631FJG0.88181A SSU rRNAC1459A1460G1461*C1440G1441G1442A1446G1447cWWtHScWW
4 IL_4GXY_0094GXY0.94240Major groove minor groove platform with extra cWWAAdenosylcobalamin riboswitchC105A106C107*G122G123A124A125G126cWWntHScWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
GGG*CGAUUC1
GAG*CGAUUC1
CAG*CGGGAG1
CAC*GGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
G*GAUU1
A*GAUU1
A*GGGA1
A*GAA1
Annotations
  • (3)
  • Major groove minor groove platform with extra cWW (1)
  • Basepair signature
    cWW-R-R-tHS-cWW
    Heat map statistics
    Min 0.14 | Avg 0.54 | Max 0.96
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