#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 6 7 81-82-73-63-74-5
1 IL_2QBG_0552QBG0.58791B LSU rRNAG1432A1433A1434G1435*C1557C1558G1560C1561cWWcWWncBWcWW
2 IL_1VW3_0421VW30.63622A LSU rRNAA1372U1373U1374A1382*U1391A1392U1393U1394cWWncWScWW
3 IL_1VX6_0761VX60.41070A LSU rRNAU1826C1827G1828G1829*C1996G1997A1998A1999cWWcWWncWHcWW
4 IL_1CSL_0011CSL0.00001A+BRNA (13-mer) + RNA (15-mer)G46G47G48C49*G70G71A73C74cWWcWWcWHcWW
5 IL_1DUQ_0011DUQ0.04501A+BTHE REV BINDING ELEMENTG104G105G106C107*G123G124A126C127cWWcWWcWHcWW
6 IL_3J7A_0443J7A0.52870Tandem non-canonical cWW pairs (H)A SSU rRNAG954U955A956U957*A993G994A995C996cWWcWWcWW
7 IL_4CUX_0624CUX0.628002 SSU rRNAC1248U1249U1250U1251*A1234C1235A1236G1237cWWncWWncWW
8 IL_2QBG_0462QBG0.86111B LSU rRNAG1202U1203A1204G1206*U1240A1241U1242C1243cWWcwWntWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGGC*GGUAC2
GAAG*CCUGC1
AUUAAA*UAUU1
UCGG*CGAA1
GUAU*AGAC1
ACAG*CUUU1
GUAAG*UAUC1
Non-Watson-Crick part of the motif
SequenceCounts
GG*GUA2
AA*CUG1
UUAA*AU1
CG*GA1
UA*GA1
CA*UU1
UAA*AU1

Release history

Release1.17
Date2014-09-04
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_32902.1Only in the parent motif
IL_47758.3
Compare
IL_1DUQ_001, IL_1CSL_001IL_1VW3_042, IL_2QBG_046, IL_2QBG_055, IL_1VX6_076, IL_4CUX_062, IL_3J7A_044IL_4CUV_105, IL_1S72_037, IL_4BPP_084
IL_55114.2
Compare
IL_4CUX_062IL_1VW3_042, IL_1CSL_001, IL_2QBG_055, IL_1DUQ_001, IL_1VX6_076, IL_3J7A_044, IL_2QBG_046IL_3BNP_002, IL_3BNP_003, IL_4NVV_045, IL_2QBG_057, IL_3BNQ_005
IL_41766.8
Compare
IL_2QBG_055IL_1VW3_042, IL_1CSL_001, IL_4CUX_062, IL_1DUQ_001, IL_1VX6_076, IL_3J7A_044, IL_2QBG_046IL_2NOK_007, IL_2NOK_004, IL_4P9R_002, IL_4CUX_092, IL_1FJG_029, IL_4BPP_086, IL_4CUV_141, IL_4CUV_140, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_1VW3_023, IL_3U5F_083, IL_1VW3_008, IL_4EYA_010, IL_3U5F_047, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_4CUX_008, IL_3U5F_008, IL_1VW3_044, IL_1G1X_003, IL_1JID_002, IL_4P8Z_002, IL_3TZR_003, IL_2AW7_036, IL_4CUX_046, IL_4BPP_051, IL_2A64_004, IL_1D4R_001, IL_4K27_003, IL_1D4R_003, IL_4K27_001, IL_4CUX_085, IL_280D_001, IL_4CUV_110, IL_4CUX_052, IL_4IOA_041, IL_4CUX_045, IL_3U5F_090, IL_3WBM_003, IL_3WBM_002, IL_4EYA_008, IL_4BPP_008, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_4BPP_089, IL_3U5F_055, IL_4K27_002, IL_1S72_012, IL_3U5F_078, IL_1GID_001, IL_1F7Y_003, IL_402D_001, IL_4CUX_057, IL_4EYA_012, IL_4BPP_044, IL_4BPP_045, IL_4CUV_125, IL_4BPP_043
IL_30381.1
Compare
IL_2QBG_046IL_1VW3_042, IL_1CSL_001, IL_2QBG_055, IL_1DUQ_001, IL_1VX6_076, IL_4CUX_062, IL_3J7A_044IL_255D_001
IL_81597.1
Compare
IL_1VW3_042IL_1DUQ_001, IL_1CSL_001, IL_2QBG_055, IL_1VX6_076, IL_4CUX_062, IL_3J7A_044, IL_2QBG_046IL_2FQN_003, IL_2OE5_002

Children motifs

Child motifCommon motif instancesOnly in IL_32902.1Only in the child motif
IL_32902.2
Compare
IL_1VX6_076, IL_2QBG_046, IL_4CUX_062, IL_1DUQ_001, IL_3J7A_044, IL_1CSL_001IL_2QBG_055, IL_1VW3_042IL_4R0D_004, IL_4W23_028, IL_4W21_082
IL_41766.10
Compare
IL_2QBG_055IL_1VW3_042, IL_2QBG_046, IL_4CUX_062, IL_1DUQ_001, IL_1VX6_076, IL_3J7A_044, IL_1CSL_001IL_1VX6_133, IL_4P9R_002, IL_4CUX_092, IL_1FJG_029, IL_4CUV_141, IL_4CUV_140, IL_2PN4_004, IL_3U5H_106, IL_3U5F_048, IL_3U5F_047, IL_3U5F_046, IL_4W23_056, IL_1G1X_003, IL_3J7A_067, IL_4W23_045, IL_4K27_002, IL_4K27_003, IL_4K27_001, IL_4CUX_085, IL_4IOA_041, IL_1GID_008, IL_3U5F_055, IL_1GID_001, IL_4A1B_047, IL_3U5F_049, IL_2NOK_007, IL_2NOK_004, IL_4W21_145, IL_4BPP_008, IL_1VW3_008, IL_4W23_036, IL_2AW7_036, IL_4CUX_008, IL_3J7A_008, IL_4W21_091, IL_1JID_002, IL_1MFQ_004, IL_4BPP_089, IL_4BPP_086, IL_4W21_068, IL_1VW3_023, IL_3U5F_083, IL_3U5F_008, IL_4TS2_005, IL_2A64_004, IL_1D4R_001, IL_1D4R_003, IL_4W21_134, IL_4CUV_110, IL_4KZD_004, IL_3U5F_090, IL_1VX6_008, IL_402D_001, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1S72_018, IL_3J7A_037, IL_1S72_012, IL_4CUX_052, IL_4CUX_057, IL_280D_001, IL_3U5H_043, IL_2QBG_041, IL_1VW3_044, IL_4P8Z_002, IL_3TZR_003, IL_4CUX_045, IL_4CUX_046, IL_4BPP_051, IL_4EYA_008, IL_1VX6_022, IL_1VX6_028, IL_3WBM_003, IL_3WBM_002, IL_3R2D_002, IL_4A1B_103, IL_4W23_064, IL_4W23_067, IL_3U5F_078, IL_1F7Y_003, IL_4EYA_010, IL_4EYA_012, IL_4BPP_044, IL_4BPP_045, IL_4CUV_125, IL_4BPP_043
IL_99561.1
Compare
IL_1VW3_042IL_1VX6_076, IL_2QBG_046, IL_4CUX_062, IL_1DUQ_001, IL_2QBG_055, IL_3J7A_044, IL_1CSL_001IL_1LNG_002, IL_4QCN_053, IL_4IOA_055, IL_2IL9_002, IL_4QCN_010
Annotations
  • (7)
  • Tandem non-canonical cWW pairs (H) (1)
  • Basepair signature
    cWW-cWW-cWH-cWW
    Heat map statistics
    Min 0.05 | Avg 0.58 | Max 0.95
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