Motif IL_33711.1 Version IL_33711.1 of this group appears in releases 3.89 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-2 | 1-9 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CB3_004 | 6CB3 | 0.0000 | 2 | Minor groove platform | B | RNA (99-MER) | G | 38 | U | 39 | C | 40 | A | 41 | U | 44 | C | 45 | G | 46 | * | C | 59 | C | 60 | cSH | cWW | cWW |
| 2 | IL_6N2V_002 | 6N2V | 0.5844 | 2 | Minor groove platform | A | X. oryzae Mn riboswitch optimized construct | A | 45 | A | 46 | C | 47 | A | 48 | A | 50 | U | 52 | C | 53 | * | G | 64 | U | 65 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAAUUCG*CC | 1 |
| AACAUACUC*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAAUUC* | 1 |
| ACAUACU* | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (2)
- Basepair signature
- cWW-cSH-cWW-L-L-R-L
- Heat map statistics
- Min 0.58 | Avg 0.29 | Max 0.58
Coloring options: