Motif IL_33842.1 Version IL_33842.1 of this group appears in releases 1.10 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 3-5 | 4-7 | 5-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4M4O_005 | 4M4O | 0.0000 | 2 | Major groove minor groove platform with intercalation; mini C-loop | B | RNA (59-MER) | G | 28 | U | 29 | U | 30 | A | 31 | C | 32 | * | G | 36 | C | 39 | cWW | ncSH | cWS | cWW |
2 | IL_4M6D_014 | 4M6D | 0.1138 | 2 | Major groove minor groove platform with intercalation; mini C-loop | H | aptamer | G | 28 | U | 29 | U | 30 | A | 31 | C | 32 | * | G | 36 | C | 39 | cWW | ncSH | cWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUAC*GUUC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUA*UU | 2 |
Release history
Release | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
---|---|---|---|---|---|---|---|---|
Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with intercalation; mini C-loop (2)
- Basepair signature
- cWW-cSH-L-cWS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.06 | Max 0.11
Coloring options: