Motif IL_33912.1 Version IL_33912.1 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-2 | 1-8 | 2-8 | 3-8 | 4-7 | 5-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_395 | 8C3A | 0.0809 | 2 | CM | SSU rRNA | G | 42 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 429 | G | 430 | C | 431 | cWW | ntSs | cWW | |||
2 | IL_4V88_387 | 4V88 | 0.0000 | 2 | A6 | SSU rRNA | G | 42 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSs | cWW | |||
3 | IL_5J7L_013 | 5J7L | 0.9014 | 0 | AA | SSU rRNA | G | 203 | G | 204 | A | 205 | C | 206 | C | 207 | * | G | 212 | G | 213 | C | 214 | cWW | cWW | ||||
4 | IL_4YAZ_005 | 4YAZ | 0.9218 | 1 | R | Cyclic di-GMP-I riboswitch | G | 77 | A | 78 | A | 79 | A | 80 | U | 81 | * | A | 4 | A | 6 | C | 7 | cSH | cWW | ntHS | cWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUUAAG*CGC | 2 |
GGACC*GGC | 1 |
GAAAU*ACAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUUAA*G | 2 |
GAC*G | 1 |
AAA*CA | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.08 | Avg 0.53 | Max 0.93
Coloring options: