#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 131-51-132-124-125-138-9
1 IL_2QBG_0422QBG0.22321B23S rRNAC1043C1044C1045G1047A1048C1049A1050G1051*U1108C1109G1110A1111G1112csScWWntsStSHtSscWW
2 IL_1S72_0431S720.00001Kink-turn (H)0 LSU rRNAC1147C1148U1149G1151A1152C1153A1154G1155*C1212C1213G1214A1215G1216csScWWtsStSHtSscWW
3 IL_3U5H_0593U5H0.15281525S rRNAU1218C1219U1220G1222A1223C1224A1225G1226*C1283C1284G1285A1286A1287cWWtsStSHcWW
4 IL_4IOA_0394IOA0.30681Kink-turn (H)X LSU rRNAC1054A1055U1056G1058A1059C1060A1061G1062*U1119C1120G1121A1122G1123cWWntSHncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCCAGACAG*UCGAG1
CCUAGACAG*CCGAG1
UCUAGACAG*CCGAA1
CAUAGACAG*UCGAG1
Non-Watson-Crick part of the motif
SequenceCounts
CUAGACA*CGA2
CCAGACA*CGA1
AUAGACA*CGA1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.131.14
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_34363.2Only in the parent motif
IL_34363.1
Compare
IL_2QBG_042, IL_3U5H_059, IL_1S72_043IL_4IOA_039

Children motifs

Child motifCommon motif instancesOnly in IL_34363.2Only in the child motif
IL_34363.3
Compare
IL_2QBG_042, IL_3U5H_059, IL_1S72_043, IL_4IOA_039IL_4CUV_060
Annotations
  • Kink-turn (H) (2)
  • (2)
  • Basepair signature
    cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
    Heat map statistics
    Min 0.15 | Avg 0.21 | Max 0.37
    Help

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