Motif IL_34628.2 Version IL_34628.2 of this group appears in releases 0.7 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NVI_001 | 3NVI | 0.2378 | 1 | E | RNA (24-mer) | G | 15 | C | 16 | G | 17 | G | 19 | A | 20 | U | 21 | G | 22 | * | C | 4 | U | 5 | G | 6 | A | 7 | C | 8 | cWW | ntsS | tSH | tHS | cWw | cWW | |
| 2 | IL_3Q3Z_004 | 3Q3Z | 0.0000 | 1 | A | Cyclic di-GMP-II riboswitch | C | 16 | A | 17 | A | 18 | G | 20 | A | 21 | U | 22 | G | 23 | * | U | 54 | U | 55 | G | 56 | A | 57 | G | 58 | cWW | ntsS | tSH | tHS | cWw | cWW | |
| 3 | IL_3Q3Z_002 | 3Q3Z | 0.0453 | 1 | Kink-turn | V | Cyclic di-GMP-II riboswitch | C | 16 | A | 17 | A | 18 | G | 20 | A | 21 | U | 22 | G | 23 | * | U | 54 | U | 55 | G | 56 | A | 57 | G | 58 | cWW | ntsS | tSH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGAUG*UUGAG | 2 |
| GCGUGAUG*CUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGAU*UGA | 2 |
| CGUGAU*UGA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_34628.2 | Only in the parent motif |
|---|---|---|---|
| IL_34628.1 Compare | IL_3Q3Z_004, IL_3Q3Z_002, IL_3NVI_001 | IL_3NVI_002 |
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (1)
- Basepair signature
- cWW-tSS-L-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.12 | Max 0.24
Coloring options: