Motif IL_35994.1 Version IL_35994.1 of this group appears in releases 1.5 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_022 | 1FJG | 0.0000 | 4 | A | SSU rRNA | C | 569 | A | 574 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 2 | IL_4IOA_094 | 4IOA | 0.8736 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2580 | A | 2581 | G | 2582 | * | C | 2570 | G | 2571 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAAG*CG | 1 |
| CAG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAA* | 1 |
| A* | 1 |
Release history
| Release | 1.5 |
|---|---|
| Date | 2013-08-03 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_35994.1 | Only in the parent motif |
|---|---|---|---|
| IL_56077.1 Compare | IL_4IOA_094 | IL_1FJG_022 | IL_2XZM_026, IL_4FAW_005 |
| IL_92109.1 Compare | IL_1FJG_022 | IL_4IOA_094 | IL_2XZM_033, IL_3V2F_095, IL_2QBG_097, IL_3U5F_033, IL_2QBG_022, IL_4A1B_113, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024 |
Children motifs
| Child motif | Common motif instances | Only in IL_35994.1 | Only in the child motif |
|---|---|---|---|
| IL_33484.1 Compare | IL_1FJG_022 | IL_4IOA_094 | IL_1KXK_003, IL_3U5F_086 |
| IL_97095.1 Compare | IL_4IOA_094 | IL_1FJG_022 |
- Annotations
-
- (1)
- Single bulged A (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.87 | Avg 0.44 | Max 0.87
Coloring options: