#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 71-72-64-75-6
1 IL_8C3A_1268C3A0.25712Major groove minor groove platform with tHH1 LSU rRNAU3019A3020A3021U3022U3023*A3063A3066cWWntHHcWW
2 IL_5TBW_1175TBW0.24522Major groove minor groove platform with tHH1 LSU rRNAU3047A3048A3049U3050U3051*A3091A3094cWWtHHcWW
3 IL_4WF9_0504WF90.00001Major groove minor groove platform with tHHX LSU rRNAG1356G1357A1358A1359G1360*C1368C1370cWWtHHcWScWW
4 IL_7A0S_0477A0S0.20011C-loopX LSU rRNAG1332G1333A1334A1335G1336*C1344C1346cWWcWScWW
5 IL_6CZR_1256CZR0.66110C-loop1a SSU rRNAU300G301G302C303C304*G288G289cWWcWW
6 IL_4LFB_0134LFB0.65380C-loopA SSU rRNAU304G305G306C307C308*G292G293cWWcWW
7 IL_5J7L_0165J7L0.80900C-loopAA SSU rRNAU304G305A306C307C308*G292G293cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAAUU*ACCA2
GGAAG*CGC2
UGGCC*GG2
UGACC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
AAU*CC2
GAA*G2
GGC*2
GAC*1

Release history

Release3.803.813.823.833.843.853.863.873.88
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • C-loop (4)
  • Major groove minor groove platform with tHH (3)
  • Basepair signature
    cWW-L-cWW-L-L
    Heat map statistics
    Min 0.13 | Avg 0.45 | Max 0.83
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