Motif IL_37842.1 Version IL_37842.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-10 | 4-9 | 5-8 | 6-7 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V88_393 | 4V88 | 0.0849 | 0 | A6 | SSU rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 295 | U | 296 | U | 297 | C | 298 | A | 299 | cWW | ntHS | cWw | cWw | cWW | ||
2 | IL_8C3A_401 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | U | 117 | U | 118 | A | 119 | U | 120 | U | 121 | U | 122 | * | A | 293 | U | 294 | U | 295 | C | 296 | A | 297 | cWW | ntHS | cWw | cWw | cWW | ||
3 | IL_1L9A_006 | 1L9A | 0.6333 | 1 | B | signal recognition particle RNA S domain | U | 181 | G | 182 | A | 184 | C | 185 | C | 186 | G | 187 | * | C | 212 | A | 213 | A | 214 | A | 215 | A | 216 | cWW | ntHH | ncWWa | cWW | |||
4 | IL_4V88_386 | 4V88 | 0.8607 | 0 | Triple sheared related | A6 | SSU rRNA | U | 466 | G | 467 | A | 468 | C | 469 | A | 470 | A | 471 | * | U | 37 | C | 38 | A | 39 | A | 40 | A | 41 | cWW | tSH | cWW | cWW | ||
5 | IL_8C3A_394 | 8C3A | 0.8253 | 0 | Triple sheared related | CM | SSU rRNA | U | 464 | G | 465 | A | 466 | C | 467 | A | 468 | A | 469 | * | U | 37 | C | 38 | A | 39 | A | 40 | A | 41 | cWW | tSH | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUAUUU*AUUCA | 2 |
UGACAA*UCAAA | 2 |
UGAACCG*CAAAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAUU*UUC | 2 |
GACA*CAA | 2 |
GAACC*AAA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Triple sheared related (2)
- Basepair signature
- cWW-L-R-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.49 | Max 0.86
Coloring options: