Motif IL_37964.1 Version IL_37964.1 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	4-5	4-6
1	IL_1NTB_003	1NTB	0.3746	0		B+A	RNA (18-mer)	G	110	G	111	*	C	15	U	16	U	17	C	18		cWW	cWW
2	IL_4IOA_022	4IOA	0.3024	0	Major groove platform; stack outside cWW (H)	X	LSU rRNA	A	944	G	945	*	U	857	G	858	U	859	U	860		cWW	cWW
3	IL_1VX2_040	1VX2	0.1914	0		2	18S ribosomal RNA	A	922	G	923	*	C	1019	A	1020	U	1021	U	1022		cWW	cWW	ncSH
4	IL_3J7A_040	3J7A	0.0893	0	Major groove platform; stack outside cWW (H)	A	SSU rRNA	A	933	G	934	*	C	1031	A	1032	U	1033	U	1034		cWW	cWW
5	IL_3U5F_045	3U5F	0.0000	0		6	18S rRNA	A	865	G	866	*	C	962	A	963	U	964	U	965		cWW	cWW
6	IL_4BPP_042	4BPP	0.1313	0		A	18S RRNA	A	843	G	844	*	C	940	A	941	U	942	U	943		cWW	cWW	ncSH
7	IL_1S72_008	1S72	0.2269	0	Major groove platform; stack outside cWW (H)	0	LSU rRNA	U	265	G	266	*	C	245	G	246	A	247	A	248	tHS	cWW	cWW
8	IL_4QK8_003	4QK8	0.2145	0		A	C-di-AMP riboswitch	G	39	G	40	*	C	89	G	90	A	91	C	92	tHS	cWW	cWW		ncSH
9	IL_4QK9_003	4QK9	0.3187	0	Major groove platform; stack outside cWW	A	C-di-AMP riboswitch	G	43	G	44	*	C	93	G	94	U	95	C	96	ntHS	cWW	cWW
10	IL_4QCN_046	4QCN	0.2863	0		A	23S Ribosomal RNA	A	1649	C	1650	*	G	1356	G	1357	U	1358	U	1359		cWW	cWW	cSH
11	IL_4QCN_062	4QCN	0.3351	0		A	23S Ribosomal RNA	U	2015	C	2016	*	G	1713	G	1714	A	1715	A	1716	tHS	cWW	cWW
12	IL_4A1B_065	4A1B	0.5753	0		1	26S RRNA	A	1859	C	1860	*	G	1518	G	1519	U	1520	U	1521		cWW	cWW
13	IL_4IOA_048	4IOA	0.6118	0	Major groove platform; stack outside cWW (H)	X	LSU rRNA	A	1619	C	1620	*	G	1323	G	1324	U	1325	U	1326		cWW	cWW
14	IL_1S72_050	1S72	0.6230	0	Major groove platform; stack outside cWW (H)	0	LSU rRNA	A	1678	C	1679	*	G	1416	G	1417	U	1418	U	1419		cWW	cWW
15	IL_3U5H_067	3U5H	0.6188	0		5	25S rRNA	A	1835	C	1836	*	G	1492	G	1493	U	1494	U	1495		cWW	cWW
16	IL_1VX6_027	1VX6	0.6964	0		A	28S ribosomal RNA	G	599	U	600	*	G	591	C	592	A	593	C	594		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AC*GGUU	5
AG*CAUU	4
GG*CUUC	1
AG*UGUU	1
UG*CGAA	1
GG*CGAC	1
GG*CGUC	1
UC*GGAA	1
GU*GCAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*GU	7
*AU	4
*GA	3
*UU	1
*CA	1

Release history

Release	1.17
Date	2014-09-04
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_37964.1	Only in the parent motif
IL_58291.5 Compare	IL_4IOA_048, IL_3U5H_067, IL_1S72_008, IL_1S72_050, IL_1NTB_003, IL_3U5F_045, IL_4A1B_065, IL_4IOA_022, IL_4BPP_042	IL_4QCN_046, IL_4QK9_003, IL_4QK8_003, IL_1VX2_040, IL_1VX6_027, IL_4QCN_062, IL_3J7A_040	IL_4NVV_049

Children motifs

Child motif	Common motif instances	Only in IL_37964.1	Only in the child motif
IL_37964.2 Compare	IL_4QCN_046, IL_4IOA_048, IL_1VX6_027, IL_1S72_008, IL_1S72_050, IL_4QK8_003, IL_1NTB_003, IL_4BPP_042, IL_3U5H_067, IL_4QCN_062, IL_3J7A_040, IL_4A1B_065, IL_4IOA_022, IL_4QK9_003, IL_3U5F_045	IL_1VX2_040	IL_4W23_042

Annotations: (10)
Major groove platform; stack outside cWW (H) (5)
Major groove platform; stack outside cWW (1)
Basepair signature: cWW-tHS-R-cWW
Heat map statistics: Min 0.07 | Avg 0.43 | Max 0.80

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Coloring options: Nucleotide numbers

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