Motif IL_38336.1 Version IL_38336.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-3 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3DIR_004 | 3DIR | 0.3348 | 0 | A | RNA (174-MER) | C | 38 | A | 39 | U | 40 | C | 41 | * | G | 54 | G | 55 | cWW | cWW | ||
| 2 | IL_1NTB_003 | 1NTB | 0.0000 | 0 | A+B | RNA (22-mer) + RNA (18-mer) | C | 15 | U | 16 | U | 17 | C | 18 | * | G | 110 | G | 111 | cWW | cWW | ||
| 3 | IL_3O58_078 | 3O58 | 0.5058 | 0 | 1 | 25S ribosomal RNA | G | 1492 | G | 1493 | U | 1494 | U | 1495 | * | A | 1835 | C | 1836 | cWW | cWW | ||
| 4 | IL_3O30_044 | 3O30 | 0.4159 | 0 | 1 | 18S ribosomal RNA | C | 962 | A | 963 | U | 964 | U | 965 | * | A | 865 | G | 866 | cWW | cWW | ||
| 5 | IL_3O58_094 | 3O58 | 0.6234 | 0 | 1 | 25S ribosomal RNA | G | 1898 | G | 1899 | A | 1900 | A | 1901 | * | U | 2336 | C | 2337 | cWW | ncSH | cWW | |
| 6 | IL_2ZJR_022 | 2ZJR | 0.6346 | 0 | X | LSU rRNA | U | 857 | G | 858 | U | 859 | U | 860 | * | A | 944 | G | 945 | cWW | cWW | ||
| 7 | IL_2ZJR_046 | 2ZJR | 0.6785 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | G | 1323 | G | 1324 | U | 1325 | U | 1326 | * | A | 1619 | C | 1620 | cWW | cWW | |
| 8 | IL_1S72_050 | 1S72 | 0.7456 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | G | 1416 | G | 1417 | U | 1418 | U | 1419 | * | A | 1678 | C | 1679 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUU*AC | 3 |
| CAUC*GG | 1 |
| CUUC*GG | 1 |
| CAUU*AG | 1 |
| GGAA*UC | 1 |
| UGUU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU* | 4 |
| AU* | 2 |
| UU* | 1 |
| GA* | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38336.1 | Only in the parent motif |
|---|---|---|---|
| IL_30798.2 Compare | IL_2ZJR_022, IL_3DIR_004, IL_2ZJR_046, IL_1S72_050 | IL_1NTB_003, IL_3O58_078, IL_3O58_094, IL_3O30_044 | IL_1S72_008, IL_3D0U_004, IL_3F1H_063, IL_1G1X_001, IL_1F7Y_001, IL_1S72_061, IL_1FJG_027, IL_3F1H_048, IL_2ZJR_062 |
| IL_73059.1 Compare | IL_1NTB_003 | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_050, IL_3DIR_004, IL_3O30_044, IL_3O58_078, IL_3O58_094 | IL_2ZJR_081, IL_1S72_078 |
Children motifs
- Annotations
-
- (6)
- Major groove platform; stack outside cWW (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.50 | Max 0.80
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