Motif IL_38507.1 Version IL_38507.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_051 | 7A0S | 0.4951 | 1 | UAA/GAN variation | X | LSU rRNA | C | 1593 | U | 1594 | A | 1595 | A | 1596 | A | 1597 | * | U | 1431 | G | 1432 | A | 1433 | G | 1435 | ntWH | cWW | |||
| 2 | IL_8P9A_276 | 8P9A | 0.2176 | 1 | UAA/GAN (H) | AR | LSU rRNA | U | 1167 | U | 1168 | A | 1169 | A | 1170 | G | 1171 | * | C | 1328 | U | 1329 | A | 1330 | A | 1332 | cWW | tWH | ntHW | cWW | |
| 3 | IL_8P9A_348 | 8P9A | 0.1524 | 1 | UAA/GAN (H) | AR | LSU rRNA | A | 3103 | U | 3104 | U | 3105 | A | 3106 | U | 3107 | * | A | 3127 | G | 3128 | A | 3129 | U | 3131 | cWW | tWH | tHS | cWW | |
| 4 | IL_4V9F_037 | 4V9F | 0.1118 | 1 | UAA/GAN | 0 | LSU rRNA | U | 1095 | U | 1096 | A | 1097 | A | 1098 | G | 1099 | * | C | 1257 | G | 1258 | A | 1259 | A | 1261 | cWW | tWH | tHS | cWW | |
| 5 | IL_9DFE_035 | 9DFE | 0.0762 | 1 | UAA/GAN (H) | 1A | LSU rRNA | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | * | C | 1153 | G | 1154 | A | 1155 | G | 1157 | cWW | tWH | tHS | cWW | |
| 6 | IL_4WF9_036 | 4WF9 | 0.0560 | 1 | UAA/GAN | X | LSU rRNA | C | 1042 | U | 1043 | A | 1044 | A | 1045 | G | 1046 | * | C | 1197 | G | 1198 | A | 1199 | G | 1201 | cWW | tWH | tHS | cWW | |
| 7 | IL_5J7L_277 | 5J7L | 0.0000 | 1 | UAA/GAN | DA | LSU rRNA | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | * | C | 1153 | G | 1154 | A | 1155 | G | 1157 | cWW | tWH | tHS | cWW | |
| 8 | IL_7A0S_033 | 7A0S | 0.0817 | 1 | UAA/GAN | X | LSU rRNA | C | 1009 | U | 1010 | A | 1011 | A | 1012 | G | 1013 | * | C | 1164 | G | 1165 | A | 1166 | G | 1168 | cWW | tWH | tHS | cWW | |
| 9 | IL_5J7L_295 | 5J7L | 0.1738 | 1 | UAA/GAN | DA | LSU rRNA | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | * | C | 1417 | G | 1418 | A | 1419 | G | 1421 | cWW | tWH | tHS | cWW | |
| 10 | IL_9DFE_054 | 9DFE | 0.1819 | 1 | UAA/GAN (H) | 1A | LSU rRNA | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | * | C | 1417 | G | 1418 | A | 1419 | G | 1421 | cWW | tWH | tHS | cWW | |
| 11 | IL_9DFE_051 | 9DFE | 0.1873 | 1 | UAA/GAN (H) | 1A | LSU rRNA | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | * | C | 1376 | G | 1377 | A | 1378 | G | 1380 | cWW | tWH | tHS | cWW | |
| 12 | IL_8P9A_291 | 8P9A | 0.3094 | 2 | UAA/GAN (H) | AR | LSU rRNA | C | 1532 | U | 1533 | A | 1534 | A | 1535 | G | 1536 | * | C | 1585 | G | 1586 | A | 1587 | G | 1590 | cWW | tWH | tHS | cWW | |
| 13 | IL_9DFE_025 | 9DFE | 0.9256 | 0 | 1A | LSU rRNA | C | 846 | U | 847 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*CGAAG | 6 |
| CUAAA*UGAUG | 1 |
| UUAAG*CUAUA | 1 |
| AUUAU*AGAAU | 1 |
| UUAAG*CGAGA | 1 |
| CUAAG*CGAUG | 1 |
| CUAAG*CGAAAG | 1 |
| CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAA | 6 |
| UAA*GAU | 2 |
| UAA*UAU | 1 |
| UUA*GAA | 1 |
| UAA*GAG | 1 |
| UAA*GAAA | 1 |
| UGA*GU | 1 |
- Annotations
-
- UAA/GAN (H) (6)
- UAA/GAN (5)
- UAA/GAN variation (1)
- (1)
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.33 | Max 0.99
Coloring options: