Motif IL_38565.2 Version IL_38565.2 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_052 | 7A0S | 0.6696 | 1 | X | LSU rRNA | U | 1447 | A | 1448 | C | 1449 | * | G | 1573 | A | 1574 | G | 1576 | cWW | ncWw | cWW | |
| 2 | IL_8F4O_005 | 8F4O | 0.6102 | 1 | B | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW | |
| 3 | IL_7TZS_001 | 7TZS | 0.5993 | 1 | X | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW | |
| 4 | IL_8GLP_257 | 8GLP | 0.4303 | 0 | S2 | SSU rRNA | A | 1291 | C | 1292 | A | 1293 | * | U | 1306 | U | 1307 | U | 1308 | cWW | cWW | ||
| 5 | IL_8P9A_436 | 8P9A | 0.4455 | 0 | sR | SSU rRNA | A | 1234 | C | 1235 | A | 1236 | * | U | 1249 | U | 1250 | U | 1251 | cWW | cWW | ||
| 6 | IL_6RTI_005 | 6RTI | 0.3696 | 0 | X | Aptamer A9g, RNA (43-MER) | A | 4 | CFZ | 5 | CFZ | 6 | * | G | 38 | UFT | 39 | UFT | 40 | cWW | cWW | cWW | |
| 7 | IL_8GLP_297 | 8GLP | 0.0000 | 0 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | A | 1858 | C | 1859 | PSU | 1860 | * | A | 1874 | C | 1875 | U | 1876 | cWW | ncBW | cWW |
| 8 | IL_8GLP_320 | 8GLP | 0.2352 | 0 | S2 | SSU rRNA | PSU | 649 | A | 650 | PSU | 651 | * | G | 23 | C | 24 | A | 25 | cWW | cWW | cWW | |
| 9 | IL_8GLP_295 | 8GLP | 0.3341 | 0 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | PSU | 1779 | A | 1780 | PSU | 1781 | * | A | 1749 | G | 1750 | A | 1751 | cWW | cWW | cWW |
| 10 | IL_5UNE_006 | 5UNE | 0.3435 | 0 | Isolated non-canonical cWW pair | B+A | RNA (47-MER) | U | 16 | A | 17 | G | 18 | * | C | 27 | A | 28 | G | 29 | cWW | cWw | cWW |
| 11 | IL_8GLP_332 | 8GLP | 0.3433 | 0 | Isolated non-canonical cWW pair (H) | S2 | SSU rRNA | C | 1230 | C | 1231 | PSU | 1232 | * | G | 1526 | C | 1527 | G | 1528 | cWW | ncWB | cWW |
| 12 | IL_8GLP_312 | 8GLP | 0.4781 | 0 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | G | 4401 | C | 4402 | PSU | 4403 | * | G | 4440 | A | 4441 | PSU | 4442 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGU*AUAC | 2 |
| ACA*UUU | 2 |
| UAC*GACG | 1 |
| A(CFZ)(CFZ)*G(UFT)(UFT) | 1 |
| AC(PSU)*ACU | 1 |
| (PSU)A(PSU)*GCA | 1 |
| (PSU)A(PSU)*AGA | 1 |
| UAG*CAG | 1 |
| CC(PSU)*GCG | 1 |
| GC(PSU)*GA(PSU) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UA | 2 |
| C*U | 2 |
| C*C | 2 |
| A*AC | 1 |
| (CFZ)*(UFT) | 1 |
| A*C | 1 |
| A*G | 1 |
| A*A | 1 |
| C*A | 1 |
- Annotations
-
- (7)
- Isolated non-canonical cWW pair (H) (4)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.47 | Max 0.82
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