Motif IL_38680.1 Version IL_38680.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_026 | 4LFB | 0.8936 | 2 | A | SSU rRNA | U | 605 | G | 606 | A | 609 | G | 610 | A | 611 | C | 612 | * | G | 628 | G | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tSH | cWW | ||||
| 2 | IL_4IOA_017 | 4IOA | 0.4256 | 0 | Triple sheared with non-canonical cWW (H) | X | LSU rRNA | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | * | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | cWW | ntSH | tHS | tHS | ncWS | cWW |
| 3 | IL_4GMA_004 | 4GMA | 0.0000 | 0 | Z | Cobalamin riboswitch | C | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | * | G | 138 | U | 139 | G | 140 | G | 141 | A | 142 | G | 143 | cWW | ntSH | ntHS | ntHS | ncWW | ||
| 4 | IL_4V8P_190 | 4V8P | 0.5519 | 0 | D1 | LSU rRNA | C | 794 | G | 795 | A | 796 | A | 797 | G | 798 | G | 799 | * | C | 781 | U | 782 | U | 783 | G | 784 | A | 785 | G | 786 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGAC*GGGGAG | 1 |
| UGAAAC*GCGGAG | 1 |
| CGAAGC*GUGGAG | 1 |
| CGAAGG*CUUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAGA*GGGA | 1 |
| GAAA*CGGA | 1 |
| GAAG*UGGA | 1 |
| GAAG*UUGA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Triple sheared with non-canonical cWW (H) (1)
- Basepair signature
- cWW-tSH-tHS-tHS-L-R-cWW
- Heat map statistics
- Min 0.43 | Avg 0.58 | Max 0.99
Coloring options: