Motif IL_38862.5 Version IL_38862.5 of this group appears in releases 4.0 to 4.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_111 | 7A0S | 0.1095 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | X | LSU rRNA | U | 871 | G | 872 | U | 873 | A | 874 | G | 875 | * | C | 927 | G | 928 | A | 929 | A | 930 | G | 931 | ncWW | cSH | tWH | tHS | cWW | |
| 2 | IL_9DFE_026 | 9DFE | 0.0849 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | 1A | LSU rRNA | U | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | G | 919 | cWW | cSH | tWH | tHS | cWW | |
| 3 | IL_9E6Q_037 | 9E6Q | 0.0000 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge (H) | 1 | LSU rRNA | G | 977 | G | 978 | U | 979 | A | 980 | G | 981 | * | C | 1034 | G | 1035 | A | 1036 | A | 1037 | C | 1038 | cWW | cSH | tWH | tHS | cWW | |
| 4 | IL_4V9F_033 | 4V9F | 0.0876 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | 0 | LSU rRNA | G | 952 | G | 953 | U | 954 | A | 955 | G | 956 | * | C | 1011 | A | 1012 | A | 1013 | A | 1014 | C | 1015 | cWW | cSH | tWH | tHS | cWW | |
| 5 | IL_8B0X_119 | 8B0X | 0.4051 | 0 | tSH-tHW-tHS (H) | a | LSU rRNA | U | 1476 | G | 1477 | U | 1478 | A | 1479 | G | 1480 | * | U | 1515 | G | 1516 | A | 1517 | G | 1518 | G | 1519 | cWW | tSH | tWH | tHS | cWW | |
| 6 | IL_2QWY_007 | 2QWY | 0.5132 | 0 | tSH-tHW-tHS | C | SAM-II riboswitch | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAG*CGAAG | 2 |
| GGUAG*CGAAC | 1 |
| GGUAG*CAAAC | 1 |
| UGUAG*UGAGG | 1 |
| CGUAU*AAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GAA | 3 |
| GUA*AAA | 2 |
| GUA*GAG | 1 |
- Annotations
-
- 5x5 Sarcin-Ricin with intercalated A; G-bulge (3)
- tSH-tHW-tHS (1)
- tSH-tHW-tHS (H) (1)
- 5x5 Sarcin-Ricin with intercalated A; G-bulge (H) (1)
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.26 | Max 0.55
Coloring options: