Motif IL_38958.9 Version IL_38958.9 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-5 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_080 | 7A0S | 0.3229 | 2 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | G | 2300 | cWW | ntHS | cWW | |
| 2 | IL_7A0S_077 | 7A0S | 0.2353 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | ntHS | cWW | |
| 3 | IL_4WF9_082 | 4WF9 | 0.2375 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2108 | A | 2109 | G | 2110 | * | C | 2263 | G | 2264 | G | 2266 | cWW | tHS | cWW | |
| 4 | IL_5TBW_095 | 5TBW | 0.2292 | 1 | Isolated tHS basepair with bulges | 1 | LSU rRNA | U | 2423 | A | 2424 | G | 2425 | * | U | 2604 | G | 2605 | G | 2607 | cWW | tHS | cWW | |
| 5 | IL_8C3A_100 | 8C3A | 0.2438 | 1 | Isolated tHS basepair with bulges (H) | 1 | LSU rRNA | U | 2401 | A | 2402 | G | 2403 | * | U | 2576 | G | 2577 | G | 2579 | cWW | tHS | cWW | |
| 6 | IL_5J7L_325 | 5J7L | 0.2222 | 1 | Isolated tHS basepair with bulges | DA | LSU rRNA | U | 2081 | A | 2082 | G | 2083 | * | U | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 7 | IL_8VTW_011 | 8VTW | 0.1461 | 1 | Isolated tHS basepair with bulges (H) | 1A | LSU rRNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW | |
| 8 | IL_8VTW_081 | 8VTW | 0.0000 | 1 | Isolated tHS basepair with bulges (H) | 1A | LSU rRNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 9 | IL_4V9F_076 | 4V9F | 0.1217 | 1 | Isolated tHS basepair with bulges | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW | |
| 10 | IL_1L9A_004 | 1L9A | 0.4938 | 0 | Isolated tHS basepair with bulges | B | signal recognition particle RNA S domain | U | 132 | A | 133 | U | 134 | * | A | 163 | G | 164 | G | 165 | ncWWa | cWW | tHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*UGGG | 3 |
| UAG*CGGG | 2 |
| CAG*CGGG | 2 |
| CAA*UGUAG | 1 |
| CAG*UGGG | 1 |
| UAU*AGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 8 |
| A*GUA | 1 |
| A*G | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated tHS basepair with bulges (7)
- Isolated tHS basepair with bulges (H) (3)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.60
Coloring options: