#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-3
1 IL_1ET4_0061ET40.00000CRNA APTAMER, 35-MERC418C419*G426U427G428cWWcWW
2 IL_1ET4_0101ET40.04120ERNA APTAMER, 35-MERC118C119*G126U127G128cWWcWW
3 IL_1XOK_0011XOK0.87401Basepair outside cWWAalfalfa mosaic virus RNA 3' UTRC846U847*A864A865G867cWWcWW
4 IL_1XOK_0021XOK0.89041Basepair outside cWWA+Balfalfa mosaic virus RNA 3' UTRC868C869*G877A878G880cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GUG2
CU*AAUG1
CC*GAUG1
Non-Watson-Crick part of the motif
SequenceCounts
*U2
*AU2

Release history

Release0.30.4
Date2011-12-082011-12-08
StatusUpdated, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_39216.3Only in the parent motif
IL_39216.2
Compare
IL_1ET4_006, IL_1ET4_010, IL_1XOK_002, IL_1XOK_001IL_3F1H_069, IL_1U9S_008

Children motifs

Child motifCommon motif instancesOnly in IL_39216.3Only in the child motif
IL_61133.1
Compare
IL_1ET4_006, IL_1ET4_010, IL_1XOK_002, IL_1XOK_001IL_2PN4_008, IL_1ET4_008, IL_2ZJR_011, IL_2PN4_003, IL_2ZJR_016, IL_2ZJR_015, IL_2AW7_051, IL_3O30_065, IL_3O58_066, IL_3O30_022, IL_1S72_099, IL_1GID_005, IL_3O58_142, IL_2C50_002, IL_3O30_068, IL_3O58_068, IL_2XZM_030, IL_3D2V_004, IL_3D2V_001, IL_1S72_042, IL_1S72_040, IL_2QUX_001, IL_3O30_026, IL_1GID_002, IL_2ZJR_068, IL_2XXA_003, IL_2ZJR_065, IL_2XXA_005, IL_2IPY_002, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_3O30_071, IL_3O58_074, IL_3O58_076, IL_2AW7_017, IL_1GID_009, IL_3B31_001, IL_1ET4_002, IL_2AW7_026, IL_2XZM_009, IL_2ZJR_093, IL_3PYO_018, IL_2XXA_010, IL_2XXA_012, IL_1DUQ_004, IL_2NOK_006, IL_3PYO_088, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_2ZJR_034, IL_3G78_004, IL_2ZJR_031, IL_2QBG_089, IL_3O58_160, IL_1FJG_040, IL_2XZM_013, IL_1FJG_043, IL_1S72_064, IL_1S72_067, IL_2AW7_019, IL_2PLY_002, IL_1U9S_008, IL_1U9S_006, IL_6MSF_001, IL_2QBG_035, IL_1U9S_003, IL_1U9S_001, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_3PYO_034, IL_3PYO_037, IL_3PYO_032, IL_2OIU_003, IL_2OIU_001, IL_3O58_057, IL_3PYO_095, IL_3O30_010, IL_3O58_051, IL_2C4Z_002, IL_2C4Z_001, IL_2XZM_068, IL_2AW7_005, IL_2PJP_001, IL_2XZM_065, IL_1MFQ_005, IL_2AW7_002, IL_2QBG_073, IL_2QBG_023, IL_3OWZ_005, IL_2QBG_060, IL_3PYO_002, IL_3OWZ_001, IL_3D0U_005, IL_3PYO_008, IL_1R3E_001, IL_3O58_112, IL_2BQ5_002, IL_2ZJR_056, IL_3PYO_061, IL_2BQ5_001, IL_3O30_024, IL_3PYO_064, IL_2BU1_002, IL_2BU1_001, IL_1DUQ_002, IL_3O58_100, IL_1S72_086, IL_1DUQ_006, IL_2XZM_074, IL_1DUQ_008, IL_1S72_088, IL_1S72_074, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_2GIS_001, IL_1S72_002, IL_3DHS_003, IL_3D0U_001, IL_2IZN_002, IL_2IZN_001, IL_3IVK_001, IL_3IVK_003, IL_2A64_002, IL_2NZ4_007, IL_2IZM_002, IL_1U63_004, IL_1U63_002, IL_1KXK_003, IL_1X8W_001, IL_3O58_133, IL_1S72_030, IL_3O58_137, IL_1FJG_016, IL_1FJG_014, IL_3G78_015, IL_1S72_096, IL_3DIR_001, IL_3O58_046, IL_3DIR_005, IL_1S03_002, IL_1S03_001, IL_1S03_006, IL_1S03_005, IL_2XZM_057, IL_1S72_010, IL_3MUR_003, IL_1S72_014, IL_3MUR_004, IL_1R3E_002, IL_2A64_003, IL_3PYO_019, IL_2IZ9_001, IL_2IZ9_002, IL_2ZY6_002, IL_3PYO_044, IL_3O58_087, IL_2QBG_070, IL_1ET4_004, IL_2IZM_001, IL_3PYO_072, IL_3O58_121, IL_2XZM_056, IL_1FJG_005, IL_1FJG_007, IL_2AW7_001, IL_1FJG_001, IL_1FJG_002, IL_2QBG_007, IL_387D_001, IL_1S72_077, IL_2PLY_001, IL_3MEI_001, IL_2VPL_005, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_1S72_022, IL_3PYO_078, IL_3P49_003, IL_1GID_012, IL_2XZM_021, IL_2AW7_048, IL_1DQH_001, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_1FJG_036, IL_2QUX_004, IL_2QUX_005, IL_2QUX_006, IL_1JZV_002, IL_1JZV_005, IL_3O58_017, IL_2QUX_002, IL_2QUX_003, IL_2IPY_005, IL_2XZM_023, IL_1FUF_002, IL_1FUF_003, IL_1S72_104, IL_2XZM_024, IL_2AW7_008, IL_2XZM_029, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_2C50_001, IL_1NBS_001, IL_1NBS_002, IL_3DHS_002, IL_1NBS_005, IL_2ZJR_076
Annotations
  • (2)
  • Basepair outside cWW (2)
  • Basepair signature
    Heat map statistics
    Min 0.04 | Avg 0.46 | Max 0.89
    Help

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