Motif IL_39526.2 Version IL_39526.2 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3P59_001 | 3P59 | 0.5598 | 0 | A+B | RNA (15-mer) + RNA (10-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 2 | IL_2NOK_001 | 2NOK | 0.0000 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 3 | IL_2NOK_005 | 2NOK | 0.2247 | 0 | C+D | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 4 | IL_2PN4_002 | 2PN4 | 0.4755 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 4 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_39526.2 | Only in the parent motif |
|---|---|---|---|
| IL_39526.1 Compare | IL_2PN4_002, IL_2NOK_005, IL_3P59_001, IL_2NOK_001 | IL_2PN4_007 |
Children motifs
| Child motif | Common motif instances | Only in IL_39526.2 | Only in the child motif |
|---|---|---|---|
| IL_39526.3 Compare | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 | IL_3P59_001 | IL_2QBZ_001 |
| IL_76256.1 Compare | IL_3P59_001 | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.22 | Avg 0.39 | Max 0.80
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