Motif IL_39526.3 Version IL_39526.3 of this group appears in releases 0.9 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2PN4_002 | 2PN4 | 0.2176 | 2 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW | |
| 2 | IL_2NOK_001 | 2NOK | 0.0000 | 2 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW | |
| 3 | IL_2NOK_005 | 2NOK | 0.1044 | 2 | C+D | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW | |
| 4 | IL_2QBZ_001 | 2QBZ | 0.9535 | 1 | X | M-Box RNA, ykoK riboswitch aptamer | C | 163 | G | 164 | A | 165 | U | 167 | G | 168 | * | C | 21 | G | 22 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 3 |
| CGAUUG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 3 |
| GAUU* | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 |
|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_39526.3 | Only in the parent motif |
|---|---|---|---|
| IL_39526.2 Compare | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 | IL_2QBZ_001 | IL_3P59_001 |
| IL_25739.1 Compare | IL_2QBZ_001 | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_39526.3 | Only in the child motif |
|---|---|---|---|
| IL_39526.4 Compare | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 | IL_2QBZ_001 | IL_3P59_001 |
| IL_11778.1 Compare | IL_2QBZ_001 | IL_2PN4_002, IL_2NOK_005, IL_2NOK_001 |
- Annotations
- Basepair signature
- cWW-L-L-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.44 | Max 1.00
Coloring options: