Motif IL_39753.1 Version IL_39753.1 of this group appears in releases 3.80 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 4-10 | 5-9 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_009 | 4LFB | 0.9194 | 0 | tWH-tWH-tHW-tHW | A | SSU rRNA | G | 168 | C | 169 | U | 170 | A | 171 | A | 172 | U | 173 | C | 174 | * | G | 148 | A | 149 | C | 150 | A | 151 | A | 152 | C | 153 | cWW | tWH | tWH | tHW | tHW | cWW | ||
| 2 | IL_8C3A_078 | 8C3A | 0.0000 | 0 | 1 | LSU rRNA | U | 1733 | C | 1734 | U | 1735 | U | 1736 | A | 1737 | U | 1738 | G | 1739 | * | U | 1698 | U | 1699 | A | 1700 | U | 1701 | C | 1702 | A | 1703 | cWW | ncWB | ntWH | cSH | cWw | cWW | |||
| 3 | IL_5TBW_072 | 5TBW | 0.1246 | 0 | 1 | LSU rRNA | U | 1737 | C | 1738 | U | 1739 | U | 1740 | A | 1741 | U | 1742 | G | 1743 | * | U | 1702 | U | 1703 | A | 1704 | U | 1705 | C | 1706 | A | 1707 | cWW | ncWB | ntWH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUUAUG*UUAUCA | 2 |
| GCUAAUC*GACAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUAU*UAUC | 2 |
| CUAAU*ACAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- tWH-tWH-tHW-tHW (1)
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.12 | Avg 0.45 | Max 0.97
Coloring options: