Motif IL_40090.3 Version IL_40090.3 of this group appears in releases 1.1 to 1.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_052 | 3U5H | 0.3401 | 0 | 5 | 25S rRNA | A | 1133 | G | 1134 | A | 1135 | * | U | 1123 | U | 1124 | U | 1125 | cWW | ncWS | cWW | |
| 2 | IL_3V2F_030 | 3V2F | 0.3074 | 0 | A | 23S Ribosomal RNA | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | ncWS | cWW | |
| 3 | IL_3U5H_062 | 3U5H | 0.1799 | 1 | 5 | 25S rRNA | C | 1376 | G | 1377 | U | 1378 | * | A | 1428 | U | 1430 | G | 1431 | cWW | cWS | cWW | |
| 4 | IL_1S72_046 | 1S72 | 0.1478 | 1 | Isolated cWS basepair (H) | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 5 | IL_4IOA_043 | 4IOA | 0.0994 | 1 | Isolated cWS basepair (H) | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 6 | IL_3V2F_042 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW | |
| 7 | IL_2QBG_045 | 2QBG | 0.1200 | 1 | B | 23S rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW | |
| 8 | IL_3U5F_067 | 3U5F | 0.5734 | 2 | 6 | 18S rRNA | U | 1272 | A | 1275 | U | 1276 | * | A | 1436 | U | 1437 | G | 1438 | cWW | ncWS | cWW | |
| 9 | IL_2AW7_049 | 2AW7 | 0.5720 | 2 | A | 16S ribosomal RNA | U | 1052 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | cWW | ||
| 10 | IL_1FJG_041 | 1FJG | 0.5900 | 2 | Isolated cWS basepair (H) | A | SSU rRNA | U | 1052 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW |
| 11 | IL_3U5F_093 | 3U5F | 0.9345 | 0 | 6 | 18S rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 4 |
| UGCAU*AUG | 3 |
| AGA*UUU | 1 |
| UGU*AUA | 1 |
| CGC*GACG | 1 |
| CAG*UAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GU | 4 |
| GCA*U | 3 |
| G*U | 2 |
| G*AC | 1 |
| A*A | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_40090.3 | Only in the parent motif |
|---|---|---|---|
| IL_40090.2 Compare | IL_3U5F_067, IL_2AW7_049, IL_3U5H_052, IL_2QBG_045, IL_3U5F_093, IL_3U5H_062, IL_3V2F_030, IL_1S72_046, IL_1FJG_041, IL_3V2F_042 | IL_4IOA_043 | IL_2ZJR_041 |
Children motifs
| Child motif | Common motif instances | Only in IL_40090.3 | Only in the child motif |
|---|---|---|---|
| IL_40090.4 Compare | IL_2AW7_049, IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_3U5F_093, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3U5F_067, IL_3V2F_042, IL_1FJG_041 | IL_4KYY_002 |
- Annotations
-
- (8)
- Isolated cWS basepair (H) (3)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.45 | Max 0.97
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