Motif IL_40542.1 Version IL_40542.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_087 | 1S72 | 0.1798 | 1 | Major groove platform with intercalation (H) | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW |
| 2 | IL_3F1H_096 | 3F1H | 0.0000 | 1 | A | 23S RRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ncWW | cWW | ||
| 3 | IL_2ZJR_092 | 2ZJR | 0.1363 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 3 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_40542.1 | Only in the child motif |
|---|---|---|---|
| IL_62089.1 Compare | IL_2ZJR_092, IL_1S72_087, IL_3F1H_096 | IL_2ZJR_023, IL_1S72_062, IL_2ZJR_063, IL_3F1H_064 |
- Annotations
-
- Major groove platform with intercalation (H) (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.12 | Max 0.21
Coloring options: