Motif IL_41344.1 Version IL_41344.1 of this group appears in releases 3.89 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_002 | 3PDR | 0.0000 | 1 | X | M-box riboswitch (ykoK leader) | U | 159 | C | 160 | U | 161 | A | 162 | * | U | 23 | A | 25 | G | 26 | cWW | tSH | cWW |
| 2 | IL_4PDQ_003 | 4PDQ | 0.4346 | 0 | A+B | RNA (23-mer) | G | 16 | A | 17 | A | 18 | G | 19 | * | C | 30 | A | 31 | C | 32 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUA*UUAG | 1 |
| GAAG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CU*UA | 1 |
| AA*A | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.43 | Avg 0.22 | Max 0.43
Coloring options: