IL_41766.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-8	2-7	3-5	3-6	4-5
1	IL_2QBG_055	2QBG	0.8729	1		B	LSU rRNA	C	1557	C	1558	G	1560	C	1561	*	G	1432	A	1433	A	1434	G	1435	cWW	ncWB		cWW	cWW
2	IL_1F7Y_003	1F7Y	0.0000	1		B	16S RIBOSOMAL RNA FRAGMENT	G	26	A	27\|\|A	G	28\|\|A	G	30	*	U	39	G	40	G	41	U	42	cWW	cWW		ncwW	cWW
3	IL_2A64_004	2A64	0.2240	2		A	RNase P class B	G	236	G	237	U	238	A	241	*	U	191	G	192	C	193	C	194	cWW	ncWW			cWW
4	IL_3U5F_083	3U5F	0.2417	2		6	SSU rRNA	A	1753	A	1754			G	1757	*	C	1644	G	1645	C	1646	U	1647	cWW	ntWW			cWW
5	IL_2XZM_002	2XZM	0.3248	0		A	SSU rRNA	A	23	C	24	A	25	U	26	*	A	593	U	594	A	595	U	596	cWW	cWW	ncWw	cWW	cWW
6	IL_2XZM_091	2XZM	0.6056	0		A	SSU rRNA	A	1676	A	1677	U	1678	A	1679	*	U	1646	U	1647	C	1648	U	1649	cWW	cWWa		ncwW	cWW
7	IL_4A1B_047	4A1B	0.6066	0		1	LSU rRNA	A	1032	U	1033	U	1034	A	1035	*	U	1067	U	1068	C	1069	U	1070	cWW	ncSW		cWw	ncWW
8	IL_2XZM_044	2XZM	0.7898	0		A	SSU rRNA	A	849	G	850	U	851	U	852	*	A	931	G	932	A	933	U	934	cWW	cWW		ncWW	cWW
9	IL_3U5F_049	3U5F	0.7787	0		6	SSU rRNA	G	885	U	886	A	887	U	888	*	A	924	G	925	A	926	C	927	cWW			cWW	cWW
10	IL_2XZM_088	2XZM	0.6553	0		A	SSU rRNA	U	1635	C	1636	U	1637	G	1638	*	C	1687	C	1688	U	1689	A	1690	cWW	cWW		cWW	cWW
11	IL_1FJG_029	1FJG	0.6608	1	Tandem non-canonical cWW pairs (H)	A	SSU rRNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743	cWW	cWW		cwW	cWW
12	IL_2PN4_009	2PN4	0.7434	0		D+C	RNA (20-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	cwW		cWW	cWW
13	IL_2PN4_004	2PN4	0.7280	0		B+A	RNA (20-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	cwW		cWW	cWW
14	IL_2QBG_041	2QBG	0.7478	0		B	LSU rRNA	G	1038	A	1039	A	1040	G	1041	*	C	1114	G	1115	G	1116	C	1117	cWW	cWW		cWW	cWW
15	IL_3U5H_134	3U5H	0.7073	0		5	LSU rRNA	C	3249	U	3250	U	3251	G	3252	*	C	3235	U	3236	U	3237	G	3238	cWW	cwW		cWw	cWW
16	IL_1G1X_003	1G1X	0.6872	1	Tandem non-canonical cWW pairs	D+E	16S RIBOSOMAL RNA	G	662	A	663	G	664	G	666	*	U	740	G	741	G	742	U	743	cWW	cWW		cwW	cWW
17	IL_3U5F_008	3U5F	0.7587	0		6	SSU rRNA	G	109	U	110	U	111	A	112	*	U	302	U	303	U	304	C	305	cWW	cwW		cWw	cWW
18	IL_3U5F_048	3U5F	0.7068	1		6	SSU rRNA	C	950	A	951	A	952	G	953	*	C	874	G	875	G	877	G	878	cWW	cWW		cWW	cWW
19	IL_2XZM_008	2XZM	0.7639	0		A	SSU rRNA	G	105	U	106	U	107	A	108	*	U	293	U	294	U	295	C	296	cWW	cwW		cWw	cWW
20	IL_280D_001	280D	0.6834	0	Tandem non-canonical cWW pairs	A+B	RNA (12-mer)	C	5	U	6	U	7	G	8	*	C	17	U	18	U	19	G	20	cWW	cwW		cWw	cWW
21	IL_1D4R_001	1D4R	0.7030	0	Tandem non-canonical cWW pairs	B+A	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWWa		cWW	cWW
22	IL_1D4R_003	1D4R	0.7059	0	Tandem non-canonical cWW pairs	A+B	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4	A	5	C	6	C	7	cWW	cWW		cWW	cWW
23	IL_2XZM_045	2XZM	0.7214	1		A	SSU rRNA	C	928	A	929	A	930	A	931	*	U	852	G	853	G	855	G	856	cWW	ncWW		cWW	cWW
24	IL_280D_002	280D	0.6848	0		D+C	RNA (12-mer)	C	41	U	42	U	43	G	44	*	C	29	U	30	U	31	G	32	cWW	cwW		cWw	cWW
25	IL_2AW7_036	2AW7	0.7525	1		A	SSU rRNA	U	662	A	663	G	664	G	666	*	U	740	G	741	G	742	A	743	cWW	cWW		ncwW	cWW
26	IL_3U5H_135	3U5H	0.6482	0		5	LSU rRNA	C	3311	U	3312	U	3313	A	3314	*	U	3300	U	3301	U	3302	G	3303	cWW	cwW		cWw	cWW
27	IL_1JID_002	1JID	0.6925	0	Tandem non-canonical cWW pairs	B	HELIX 6 OF HUMAN SRP RNA	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159	cWW	cWW		cWW	cWW
28	IL_3U5F_090	3U5F	0.6111	0		6	SSU rRNA	U	1723	U	1724	U	1725	G	1726	*	C	1675	U	1676	C	1677	A	1678	cWW			cWw	cWW
29	IL_3U5F_078	3U5F	0.6219	0		6	SSU rRNA	C	1509	U	1510	U	1511	G	1512	*	C	1495	U	1496	U	1497	G	1498	cWW			cWw	cWW
30	IL_402D_001	402D	0.6301	0	Tandem non-canonical cWW pairs	B+A	RNA (8-mer)	C	111	C	112	A	113	G	114	*	C	103	C	104	A	105	G	106	cWW	cWW		cWW	cWW
31	IL_3R2D_002	3R2D	0.6357	0	Tandem non-canonical cWW pairs	R+S	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW	cwW		cWw	cWW
32	IL_2NOK_007	2NOK	0.6031	0		D+C	RNA (20-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	cwW			cWW
33	IL_1MFQ_004	1MFQ	0.4993	0	Tandem non-canonical cWW pairs	A	SRP RNA	G	138	A	139	C	140	C	141	*	G	156	A	157	C	158	C	159	cWW	ncWW		ncWW	cWW
34	IL_1GID_008	1GID	0.5479	1	Tandem non-canonical cWW pairs	B	P4-P6 RNA RIBOZYME DOMAIN	G	103	A	104	A	105	U	107	*	A	214	G	215	C	216	C	217	cWW	cWW		cWW	cWW
35	IL_3U5H_043	3U5H	0.5722	0		5	LSU rRNA	A	1006	U	1007	U	1008	A	1009	*	U	1041	U	1042	C	1043	U	1044	cWW			cWw	cWW
36	IL_1UN6_003	1UN6	0.4787	0		E	5S RIBOSOMAL RNA	C	79	U	80	G	81	G	82	*	C	94	C	95	U	96	G	97	cWW	ncWw			cWW
37	IL_3U5F_046	3U5F	0.4616	1		6	SSU rRNA	G	957	U	958	U	960	U	961	*	G	867	G	868	A	869	C	870	cWW			ncWW	cWW
38	IL_1GID_001	1GID	0.5639	1		A	P4-P6 RNA RIBOZYME DOMAIN	G	103	A	104	A	105	U	107	*	A	214	G	215	C	216	C	217	cWW	cWW		cWW	cWW
39	IL_1S72_018	1S72	0.5647	0		0	LSU rRNA	C	558	U	559	C	560	G	561	*	C	596	A	597	C	598	G	599	cWW	cWW		ncWW	cWW
40	IL_3U5H_106	3U5H	0.5898	0		5	LSU rRNA	U	2718	U	2719	G	2720	A	2721	*	U	2735	A	2736	C	2737	A	2738	cWW			cWW	cWW
41	IL_1S72_012	1S72	0.5743	0		0	LSU rRNA	G	362	A	363	C	364	G	365	*	C	287	A	288	G	289	C	290	cWW	ncWW		ncWW	cWW
42	IL_2NOK_004	2NOK	0.5932	0		B+A	RNA (20-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65	cWW	ncwW		ncWW	cWW
43	IL_3U5F_047	3U5F	0.5738	0		6	SSU rRNA	G	871	G	872	U	873	C	874	*	G	953	G	954	A	955	C	956	cWW	cWW			cWW
44	IL_4A1B_127	4A1B	0.6239	0		1	LSU rRNA	C	3271	U	3272	U	3273	A	3274	*	U	3260	U	3261	U	3262	G	3263	cWW	cWw		cWw	cWW
45	IL_4A1B_103	4A1B	0.6384	0		1	LSU rRNA	U	2724	A	2725	C	2726	A	2727	*	U	2707	U	2708	G	2709	A	2710	cWW	cWW		cWW	cWW
46	IL_2ZJR_040	2ZJR	0.7706	0	Tandem non-canonical cWW pairs (H)	X	LSU rRNA	G	1196	U	1197	C	1198	U	1199	*	A	1175	U	1176	U	1177	C	1178	cWW	cwW		cWW	cWW
47	IL_3U5F_055	3U5F	0.6210	0		6	SSU rRNA	G	1074	C	1075	A	1076	C	1077	*	G	1041	G	1042	A	1043	U	1044	cWW	ncBW		cWW	cWW
48	IL_2XZM_052	2XZM	0.7403	0		A	SSU rRNA	G	1019	G	1020	A	1021	U	1022	*	G	1046	C	1047	A	1048	C	1049	cWW	cWW		ncWB	ncWW
49	IL_422D_001	422D	0.7969	0	Tandem non-canonical cWW pairs	B+A	RNA (12-mer)	U	19	U	20	C	21	G	22	*	U	7	U	8	C	9	G	10	cWW	cWW		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUG*CUUG	5
GUCG*CUUC	4
GACC*GACC	4
GAGAG*UGGU	3
AUUA*UUCU	2
GUUA*UUUC	2
CUUA*UUUG	2
GAAUU*AGCC	2
CCUGC*GAAG	1
GGUAAA*UGCC	1
AAAAG*CGCU	1
ACAU*AUAU	1
AAUA*UUCU	1
AGUU*AGAU	1
GUAU*AGAC	1
UCUG*CCUA	1
GAAG*CGGC	1
CAAG*CGGGG	1
CAAA*UGGGG	1
UAGAG*UGGA	1
UUUG*CUCA	1
CCAG*CCAG	1
CUGG*CCUG	1
GUUUU*GGAC	1
CUCG*CACG	1
UUGA*UACA	1
GACG*CAGC	1
GGUC*GGAC	1
UACA*UUGA	1
GUCU*AUUC	1
GCAC*GGAU	1
GGAU*GCAC	1
UUCG*UUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UU*UU	9
UC*UU	5
AGA*GG	4
AC*AC	4
UU*UC	3
GU*GA	2
AA*GGG	2
AAU*GC	2
CUG*AA	1
GUAA*GC	1
AAA*GC	1
CA*UA	1
AU*UC	1
UA*GA	1
CU*CU	1
AA*GG	1
CA*CA	1
UG*CU	1
UUU*GA	1
UC*AC	1
UG*AC	1
AC*AG	1
AC*UG	1
CA*GA	1
GA*CA	1
UC*UC	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_41766.1	Only in the parent motif
IL_91286.1 Compare	IL_2PN4_009, IL_2NOK_004, IL_2PN4_004, IL_280D_002, IL_280D_001, IL_2QBG_041, IL_2XZM_091, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_1JID_002, IL_1MFQ_004, IL_1GID_001, IL_1S72_018, IL_2XZM_002, IL_1S72_012, IL_2XZM_008, IL_2XZM_088, IL_422D_001	IL_2NOK_007, IL_1FJG_029, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_2XZM_052, IL_3U5F_083, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_3U5H_134, IL_3U5F_008, IL_1G1X_003, IL_3U5F_047, IL_2A64_004, IL_3U5F_090, IL_3U5H_135, IL_3U5F_055, IL_4A1B_127, IL_4A1B_103, IL_4A1B_047, IL_3U5F_049, IL_2QBG_055, IL_3U5F_078, IL_1F7Y_003	IL_2ZZM_001, IL_255D_001, IL_3O58_083, IL_3O58_056, IL_3O58_055, IL_3O58_123, IL_413D_001, IL_1QBP_008, IL_3O30_047, IL_3O30_046, IL_165D_001, IL_3O58_152, IL_1QBP_002, IL_3O30_048, IL_1QBP_005
IL_87738.1 Compare	IL_2NOK_007, IL_1FJG_029, IL_1G1X_003, IL_1F7Y_003, IL_2A64_004, IL_2AW7_036	IL_2PN4_009, IL_2NOK_004, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_2XZM_052, IL_3U5F_083, IL_280D_001, IL_3U5F_047, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1JID_002, IL_2XZM_091, IL_4A1B_103, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_1GID_001, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_2XZM_002, IL_2QBG_055, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_3U5F_055, IL_2XZM_088, IL_280D_002, IL_422D_001	IL_3O30_029, IL_3O58_157, IL_3O30_009
IL_99404.1 Compare	IL_2QBG_055	IL_2PN4_009, IL_2NOK_004, IL_1FJG_029, IL_4A1B_103, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_2XZM_052, IL_3U5F_083, IL_280D_001, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_1F7Y_003, IL_2XZM_091, IL_3U5F_047, IL_2NOK_007, IL_2A64_004, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_1GID_001, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_2XZM_002, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_3U5F_055, IL_2XZM_088, IL_280D_002, IL_422D_001	IL_2QBG_046
IL_47671.1 Compare	IL_2XZM_052	IL_2PN4_009, IL_2NOK_004, IL_1FJG_029, IL_4A1B_103, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_280D_002, IL_3U5F_083, IL_280D_001, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_1F7Y_003, IL_2XZM_091, IL_3U5F_047, IL_2NOK_007, IL_2A64_004, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_1GID_001, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_2XZM_002, IL_2QBG_055, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_3U5F_055, IL_2XZM_088, IL_422D_001	IL_2AW7_010, IL_1S72_037

Children motifs

Child motif	Common motif instances	Only in IL_41766.1	Only in the child motif
IL_41766.2 Compare	IL_2NOK_007, IL_2NOK_004, IL_1FJG_029, IL_2PN4_004, IL_3R2D_002, IL_3U5F_049, IL_3U5F_048, IL_2XZM_052, IL_3U5F_083, IL_280D_001, IL_3U5H_134, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_2XZM_091, IL_3U5F_047, IL_2A64_004, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5F_055, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5H_106, IL_2XZM_002, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_1GID_001, IL_1F7Y_003, IL_2XZM_088	IL_2QBG_055, IL_2PN4_009, IL_280D_002, IL_422D_001, IL_1UN6_003	IL_4EYA_010, IL_3TZR_003, IL_2O3V_002, IL_4EYA_012, IL_4EYA_008
IL_02809.1 Compare	IL_422D_001	IL_2NOK_007, IL_2NOK_004, IL_2PN4_009, IL_2PN4_004, IL_3R2D_002, IL_3U5F_049, IL_3U5F_048, IL_280D_002, IL_3U5F_083, IL_280D_001, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_1FJG_029, IL_1F7Y_003, IL_2XZM_091, IL_3U5F_047, IL_2A64_004, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5H_106, IL_2XZM_002, IL_2QBG_055, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_1GID_001, IL_3U5F_055, IL_2XZM_088, IL_2XZM_052	IL_4ERD_002, IL_165D_001, IL_3V7E_009, IL_3NPB_007, IL_3GX5_004, IL_1QBP_002, IL_4AOB_004
IL_47758.1 Compare	IL_2QBG_055	IL_2NOK_007, IL_2NOK_004, IL_2PN4_009, IL_2PN4_004, IL_3R2D_002, IL_3U5F_049, IL_3U5F_048, IL_280D_002, IL_3U5F_083, IL_280D_001, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_1FJG_029, IL_1F7Y_003, IL_2XZM_091, IL_3U5F_047, IL_2A64_004, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5H_106, IL_2XZM_002, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_1GID_001, IL_3U5F_055, IL_2XZM_088, IL_2XZM_052, IL_422D_001	IL_1DUQ_001, IL_1CSL_001, IL_1S72_037

Motif IL_41766.1 Version IL_41766.1 of this group appears in releases 0.6 to 0.6 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

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Children motifs

Motif IL_41766.1 Version IL_41766.1 of this group appears in releases 0.6 to 0.6

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