#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_2QBG_0552QBG0.69251B23S rRNAC1557C1558G1560C1561*G1432A1433A1434G1435cWWncWBcWWcWW
2 IL_2A64_0042A640.54312Aribonuclease P RNAG236G237U238A241*U191G192C193C194cWWncWWcWW
3 IL_3U5F_0833U5F0.52532618S rRNAA1753A1754 G1757*C1644G1645C1646U1647cWWntWWcWW
4 IL_1F7Y_0031F7Y0.57221B16S RIBOSOMAL RNA FRAGMENTG26A27||AG28||AG30*U39G40G41U42cWWcWWncwWcWW
5 IL_1G1X_0031G1X0.45041Tandem non-canonical cWW pairsD+E16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
6 IL_1FJG_0291FJG0.47621Tandem non-canonical cWW pairs (H)A SSU rRNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
7 IL_2AW7_0362AW70.44601A16S ribosomal RNAU662A663G664G666*U740G741G742A743cWWcWWncwWcWW
8 IL_4EYA_0104EYA0.40380Tandem non-canonical cWW pairsm+nRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWncWW
9 IL_4EYA_0084EYA0.26530Tandem non-canonical cWW pairsl+kRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWcWW
10 IL_1GID_0011GID0.30271AP4-P6 RNA RIBOZYME DOMAING103A104A105U107*A214G215C216C217cWWcWWcWWcWW
11 IL_1GID_0081GID0.29621BP4-P6 RNA RIBOZYME DOMAING103A104A105U107*A214G215C216C217cWWcWWcWWcWW
12 IL_1JID_0021JID0.36740Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
13 IL_1D4R_0031D4R0.35150Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
14 IL_1MFQ_0041MFQ0.28800Tandem non-canonical cWW pairsA SRP RNAG138A139C140C141*G156A157C158C159cWWncWWncWWcWW
15 IL_1D4R_0011D4R0.26480Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWacWWcWW
16 IL_3WBM_0033WBM0.31910Tandem non-canonical cWW pairsY+XRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBcWWcWW
17 IL_3WBM_0023WBM0.31610Tandem non-canonical cWW pairsX+YRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBncWWcWW
18 IL_4BPP_0444BPP0.39980A18S RRNAA849G850U851U852*A931G932A933U934cWWcWWncWWcWW
19 IL_3U5F_0473U5F0.39280618S rRNAG871G872U873C874*G953G954A955C956cWWcWWcWW
20 IL_3U5F_0493U5F0.42870618S rRNAG885U886A887U888*A924G925A926C927cWWcWWcWW
21 IL_3U5F_0553U5F0.45610618S rRNAG1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
22 IL_4BPP_0514BPP0.40640A18S RRNAG1046C1047A1048C1049*G1019G1020A1021U1022ncWWncBWcWWcWW
23 IL_2NOK_0072NOK0.50700D+CRNA (20-mer)G102U103C104G105*C62U63U64C65cWWcwWcWW
24 IL_4A1B_1274A1B0.37510126S RRNAC3271U3272U3273A3274*U3260U3261U3262G3263cWWcWwcWwcWW
25 IL_4K27_0024K270.38550Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC8C9U10G11*C45C46U47G48cWWcWWcWWcWW
26 IL_4K27_0034K270.37110Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC12C13U14G15*C41C42U43G44cWWcWWcWWcWW
27 IL_1S72_0181S720.368100 LSU rRNAC558U559C560G561*C596A597C598G599cWWcWWncWWcWW
28 IL_4K27_0014K270.31260Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC49C50U51G52*C4C5U6G7cWWcWWcWWcWW
29 IL_2PN4_0042PN40.28680B+ARNA (20-mer)G102U103C104G105*C62U63U64C65cWWcwWcWWcWW
30 IL_3TZR_0033TZR0.32460Tandem non-canonical cWW pairsB+ARNA (16-mer)G102U103C104G105*C62U63U64C65cWWcwWcWWcWW
31 IL_4IOA_0414IOA0.33750Tandem non-canonical cWW pairsX LSU rRNAG1196U1197C1198U1199*A1175U1176U1177C1178cWWcwWcWWcWW
32 IL_4BPP_0894BPP0.24270A18S RRNAA1676A1677U1678A1679*U1646U1647C1648U1649cWWcWWacWwcWW
33 IL_2NOK_0042NOK0.37960B+ARNA (20-mer)G102U103C104G105*C62U63U64C65cWWncwWncWWcWW
34 IL_4BPP_0864BPP0.25000A18S RRNAU1635C1636U1637G1638*C1687C1688U1689A1690cWWncWWcWWcWW
35 IL_4EYA_0124EYA0.37710q+rRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
36 IL_3U5H_1353U5H0.34890525S rRNAC3311U3312U3313A3314*U3300U3301U3302G3303cWWcwWcWwcWW
37 IL_3R2D_0023R2D0.35420Tandem non-canonical cWW pairsR+SRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
38 IL_3U5H_1343U5H0.37680525S rRNAC3249U3250U3251G3252*C3235U3236U3237G3238cWWcwWcWwcWW
39 IL_280D_001280D0.36580Tandem non-canonical cWW pairsA+BRNA (12-mer)C5U6U7G8*C17U18U19G20cWWcwWcWwcWW
40 IL_4BPP_0084BPP0.44960A18S RRNAG105U106U107A108*U293U294U295C296cWWcwWcWwcWW
41 IL_3U5F_0083U5F0.41610618S rRNAG109U110U111A112*U302U303U304C305cWWcwWcWwcWW
42 IL_4A1B_0474A1B0.47660126S RRNAA1032U1033U1034A1035*U1067U1068C1069U1070cWWncSWcWwncWW
43 IL_402D_001402D0.45060Tandem non-canonical cWW pairsB+ARNA (8-mer)C111C112A113G114*C103C104A105G106cWWcWWcWWcWW
44 IL_3U5H_0433U5H0.35420525S rRNAA1006U1007U1008A1009*U1041U1042C1043U1044cWWcWwcWW
45 IL_3U5F_0903U5F0.40380618S rRNAU1723U1724U1725G1726*C1675U1676C1677A1678cWWcWwcWW
46 IL_3U5F_0463U5F0.33011618S rRNAG957U958U960U961*G867G868A869C870cWWncWWcWW
47 IL_4BPP_0434BPP0.30861A18S RRNAG935U936U938U939*G845G846A847C848cWWncWWncWWcWW
48 IL_1S72_0121S720.000000 LSU rRNAG362A363C364G365*C287A288G289C290cWWncWWncWWcWW
49 IL_4A1B_1034A1B0.23720126S RRNAU2724A2725C2726A2727*U2707U2708G2709A2710cWWcWWcWWcWW
50 IL_2QBG_0412QBG0.24470B23S rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
51 IL_3U5H_1063U5H0.26940525S rRNAU2718U2719G2720A2721*U2735A2736C2737A2738cWWcWWcWW
52 IL_4BPP_0454BPP0.39161A18S RRNAC928A929A930A931*U852G853G855G856cWWcWWcWWcWW
53 IL_3U5F_0483U5F0.41021618S rRNAC950A951A952G953*C874G875G877G878cWWcWWcWWcWW
54 IL_3U5F_0783U5F0.57000618S rRNAC1509U1510U1511G1512*C1495U1496U1497G1498cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG7
GACC*GACC4
GUCG*CUUC4
GAGAG*UGGU3
CCUG*CCUG3
GAAUU*AGCC2
ACCC*GACU2
GCAC*GGAU2
CUUA*UUUG2
GUUA*UUUC2
AUUA*UUCU2
GUUUU*GGAC2
CCUGC*GAAG1
GGUAAA*UGCC1
AAAAG*CGCU1
UAGAG*UGGA1
AGUU*AGAU1
GGUC*GGAC1
GUAU*AGAC1
CUCG*CACG1
GUCU*AUUC1
AAUA*UUCU1
UCUG*CCUA1
CCAG*CCAG1
UUUG*CUCA1
GACG*CAGC1
UACA*UUGA1
GAAG*CGGC1
UUGA*UACA1
CAAA*UGGGG1
CAAG*CGGGG1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU11
UC*UU5
AGA*GG4
AC*AC4
CU*CU4
UU*UC3
AAU*GC2
CC*AC2
GU*GA2
CA*GA2
UUU*GA2
AA*GGG2
CUG*AA1
GUAA*GC1
AAA*GC1
UA*GA1
UC*AC1
AU*UC1
CA*CA1
AC*AG1
AC*UG1
AA*GG1
UG*AC1

Release history

Release1.101.111.121.13
Date2014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_41766.6Only in the child motif
IL_41766.7
Compare
IL_2NOK_007, IL_2NOK_004, IL_1FJG_029, IL_4BPP_086, IL_4BPP_008, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_3U5F_083, IL_280D_001, IL_3U5F_047, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_3TZR_003, IL_2AW7_036, IL_4BPP_051, IL_2A64_004, IL_1D4R_001, IL_4K27_003, IL_1D4R_003, IL_4K27_001, IL_4IOA_041, IL_3U5F_090, IL_3WBM_003, IL_3WBM_002, IL_4EYA_008, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_4BPP_089, IL_3U5F_055, IL_2QBG_055, IL_4K27_002, IL_1S72_012, IL_3U5F_078, IL_1GID_001, IL_1F7Y_003, IL_402D_001, IL_4EYA_010, IL_4EYA_012, IL_4BPP_044, IL_4BPP_045, IL_4BPP_043IL_1VW3_023, IL_1VW3_044, IL_1VW3_008
Annotations
  • (36)
  • Tandem non-canonical cWW pairs (17)
  • Tandem non-canonical cWW pairs (H) (1)
  • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.46 | Max 0.89
    Help

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