#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 61-63-44-5
1 IL_1U6B_0091U6B0.11900Major groove platform with intercalated tWHB197-MERC147U148A149A150*U162G163cWWcSHcWW
2 IL_4FNJ_0034FNJ0.00000ARNA (35-MER)C8U9A10A11*U27G28cWWcSHcWW
3 IL_1QA6_0011QA60.86152C58 NUCLEOTIDE RIBOSOMAL RNA DOMAINC126A127U128C129*G109G112cWWcWW
4 IL_2QBG_0432QBG0.92032B23S rRNAC1076A1077U1078C1079*G1059G1062cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAA*UG2
CAUC*GUAG1
CAUC*GUUG1
Non-Watson-Crick part of the motif
SequenceCounts
UA*2
AU*UA1
AU*UU1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.131.14
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_42251.1Only in the child motif
IL_83339.1
Compare
IL_2QBG_043, IL_1QA6_001IL_4FNJ_003, IL_1U6B_009IL_3ZP8_002, IL_4CUX_018
IL_49668.1
Compare
IL_4FNJ_003, IL_1U6B_009IL_2QBG_043, IL_1QA6_001IL_3U5H_132, IL_4CUV_138
Annotations
  • (3)
  • Major groove platform with intercalated tWH (1)
  • Basepair signature
    cWW-L-cSH-cWW
    Heat map statistics
    Min 0.12 | Avg 0.49 | Max 0.93
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