Motif IL_42251.1 Version IL_42251.1 of this group appears in releases 1.1 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_009 | 1U6B | 0.1190 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | cWW |
| 2 | IL_4FNJ_003 | 4FNJ | 0.0000 | 0 | A | RNA (35-MER) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 27 | G | 28 | cWW | cSH | cWW | |
| 3 | IL_1QA6_001 | 1QA6 | 0.8615 | 2 | C | LSU rRNA | C | 126 | A | 127 | U | 128 | C | 129 | * | G | 109 | G | 112 | cWW | cWW | ||
| 4 | IL_2QBG_043 | 2QBG | 0.9203 | 2 | B | LSU rRNA | C | 1076 | A | 1077 | U | 1078 | C | 1079 | * | G | 1059 | G | 1062 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAA*UG | 2 |
| CAUC*GUAG | 1 |
| CAUC*GUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 2 |
| AU*UA | 1 |
| AU*UU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_42251.1 | Only in the parent motif |
|---|---|---|---|
| IL_98556.4 Compare | IL_2QBG_043, IL_1QA6_001 | IL_4FNJ_003, IL_1U6B_009 | IL_2ZJR_038, IL_2ZI0_001 |
| IL_36254.1 Compare | IL_4FNJ_003, IL_1U6B_009 | IL_2QBG_043, IL_1QA6_001 | IL_3U5H_132 |
Children motifs
| Child motif | Common motif instances | Only in IL_42251.1 | Only in the child motif |
|---|---|---|---|
| IL_83339.1 Compare | IL_2QBG_043, IL_1QA6_001 | IL_4FNJ_003, IL_1U6B_009 | IL_3ZP8_002, IL_4CUX_018 |
| IL_49668.1 Compare | IL_4FNJ_003, IL_1U6B_009 | IL_2QBG_043, IL_1QA6_001 | IL_3U5H_132, IL_4CUV_138 |
- Annotations
-
- (3)
- Major groove platform with intercalated tWH (1)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.49 | Max 0.93
Coloring options: