Motif IL_42271.1 Version IL_42271.1 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 3-8 | 4-7 | 4-8 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_056 | 1S72 | 0.0000 | 1 | tSH-tHH-tHS (H) | 0 | LSU rRNA | C | 1570 | G | 1571 | A | 1572 | A | 1573 | C | 1574 | * | G | 1622 | C | 1623 | A | 1624 | A | 1626 | G | 1627 | cWW | tSH | tHH | tHS | cWW | ||
2 | IL_3F1H_099 | 3F1H | 0.8410 | 4 | A | 23S RRNA | C | 2774 | A | 2775 | A | 2776 | A | 2778 | G | 2782 | * | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | cWW | tSH | tHW | tHS | cWW | |||
3 | IL_1S72_089 | 1S72 | 0.8489 | 4 | 0 | LSU rRNA | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | * | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | cWW | tSH | tHW | tHS | cWW | |||
4 | IL_2ZJR_094 | 2ZJR | 0.8922 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | * | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | cWW | ntSH | tHW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAC*GCAUAG | 1 |
UUGAG*CAAGAUGAG | 1 |
GGAAAAGAG*CUGAC | 1 |
CAAGAUGAG*UUGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*CAUA | 1 |
UGA*AAGAUGA | 1 |
GAAAAGA*UGA | 1 |
AAGAUGA*UGA | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_42271.1 | Only in the parent motif |
---|---|---|---|
IL_16628.1 Compare | IL_1S72_089, IL_3F1H_099, IL_2ZJR_094 | IL_1S72_056 | IL_1S72_083, IL_3F1H_020, IL_3F1H_072 |
IL_90498.1 Compare | IL_1S72_056 | IL_1S72_089, IL_3F1H_099, IL_2ZJR_094 |
Children motifs
Child motif | Common motif instances | Only in IL_42271.1 | Only in the child motif |
---|---|---|---|
IL_20844.1 Compare | IL_3F1H_099, IL_2ZJR_094 | IL_1S72_056, IL_1S72_089 | IL_1S72_083 |
IL_08760.1 Compare | IL_1S72_056, IL_1S72_089 | IL_3F1H_099, IL_2ZJR_094 |
- Annotations
-
- (2)
- tSH-tHH-tHS (H) (1)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.40 | Max 0.89
Coloring options: