#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-73-84-74-85-6
1 IL_1S72_0561S720.00001tSH-tHH-tHS (H)0 LSU rRNAC1570G1571A1572A1573C1574*G1622C1623A1624A1626G1627cWWtSHtHHtHScWW
2 IL_3F1H_0993F1H0.84104A23S RRNAC2774A2775A2776A2778G2782*U2636U2637G2638A2639G2640cWWtSHtHWtHScWW
3 IL_1S72_0891S720.848940 LSU rRNAG2809G2810A2811A2813G2817*C2672U2673G2674A2675C2676cWWtSHtHWtHScWW
4 IL_2ZJR_0942ZJR0.89224tSH-tHS-tHW (H)X LSU rRNAC2754A2755A2756A2758G2762*U2615U2616G2617A2618G2619cWWntSHtHWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAC*GCAUAG1
UUGAG*CAAGAUGAG1
GGAAAAGAG*CUGAC1
CAAGAUGAG*UUGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*CAUA1
UGA*AAGAUGA1
GAAAAGA*UGA1
AAGAUGA*UGA1

Release history

Release0.3
Date2011-12-08
StatusNew id, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_42271.1Only in the child motif
IL_20844.1
Compare
IL_3F1H_099, IL_2ZJR_094IL_1S72_056, IL_1S72_089IL_1S72_083
IL_08760.1
Compare
IL_1S72_056, IL_1S72_089IL_3F1H_099, IL_2ZJR_094
Annotations
  • (2)
  • tSH-tHH-tHS (H) (1)
  • tSH-tHS-tHW (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.17 | Avg 0.40 | Max 0.89
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