#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-32-93-84-75-6
1 IL_1FJG_0231FJG0.00000tSH-tHW-tHS (H)A SSU rRNAU580G581U582A583G584*U757G758A759G760G761cWWtWHtHScWW
2 IL_2ZJR_0712ZJR0.60480Triple sheared (H)X LSU rRNAU1848G1849G1850A1851G1852*C1865G1866A1867A1868A1869cWWntSHntSHntHScWW
3 IL_3F1H_0153F1H0.60850A23S RRNAC618|||BG619G620A621G622*U606U607A608A609|||AG609|||BcWWtSHntHWcWW
4 IL_3F1H_0263F1H0.80230A23S RRNAU858G859U860A861G862*C915G916A917A918G919cWWncSWtHScWW
5 IL_3G78_0023G780.72690AGroup II catalytic intron D1-D4-1G113G114A115C116G117*C70U71A72A73C74cWWtSHntSHntHScWW
6 IL_3MUR_0023MUR0.79050RC92U mutant c-di-GMP riboswitchG41G42A43C44G45*C22A23A24A25C26cWWtSHntHScWW
7 IL_2QWY_0012QWY0.92410ASAM-II riboswitchC16G17U18A19U20*A46A47A48A49G50cWWtSHtHScWW
8 IL_1S72_0211S720.82900AAA cross-strand stack (H)0 LSU rRNAG679G680G681A682G683*C663U664A665A666C667cWWtSHntHWcWW
9 IL_2ZJR_0122ZJR0.92550AAA cross-strand stack (H)X LSU rRNAC629G630G631A632G633*U616U617A618A619G620cWWtSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGUAG*UGAGG1
UGGAG*CGAAA1
UUAAG*CGGAG1
UGUAG*CGAAG1
GGACG*CUAAC1
GGACG*CAAAC1
CGUAU*AAAAG1
GGGAG*CUAAC1
CGGAG*UUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGA*UAA2
GUA*GAG1
GGA*GAA1
UAA*GGA1
GUA*GAA1
GAC*UAA1
GAC*AAA1
GUA*AAA1
Annotations
  • (5)
  • AAA cross-strand stack (H) (2)
  • tSH-tHW-tHS (H) (1)
  • Triple sheared (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.21 | Avg 0.55 | Max 0.93
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