Motif IL_43241.1 Version IL_43241.1 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_023 | 1FJG | 0.0000 | 0 | tSH-tHW-tHS (H) | A | SSU rRNA | U | 580 | G | 581 | U | 582 | A | 583 | G | 584 | * | U | 757 | G | 758 | A | 759 | G | 760 | G | 761 | cWW | tWH | tHS | cWW | ||
2 | IL_2ZJR_071 | 2ZJR | 0.6048 | 0 | Triple sheared (H) | X | LSU rRNA | U | 1848 | G | 1849 | G | 1850 | A | 1851 | G | 1852 | * | C | 1865 | G | 1866 | A | 1867 | A | 1868 | A | 1869 | cWW | ntSH | ntSH | ntHS | cWW | |
3 | IL_3F1H_015 | 3F1H | 0.6085 | 0 | A | 23S RRNA | C | 618|||B | G | 619 | G | 620 | A | 621 | G | 622 | * | U | 606 | U | 607 | A | 608 | A | 609|||A | G | 609|||B | cWW | tSH | ntHW | cWW | |||
4 | IL_3F1H_026 | 3F1H | 0.8023 | 0 | A | 23S RRNA | U | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | G | 919 | cWW | ncSW | tHS | cWW | |||
5 | IL_3G78_002 | 3G78 | 0.7269 | 0 | A | Group II catalytic intron D1-D4-1 | G | 113 | G | 114 | A | 115 | C | 116 | G | 117 | * | C | 70 | U | 71 | A | 72 | A | 73 | C | 74 | cWW | tSH | ntSH | ntHS | cWW | ||
6 | IL_3MUR_002 | 3MUR | 0.7905 | 0 | R | C92U mutant c-di-GMP riboswitch | G | 41 | G | 42 | A | 43 | C | 44 | G | 45 | * | C | 22 | A | 23 | A | 24 | A | 25 | C | 26 | cWW | tSH | ntHS | cWW | |||
7 | IL_2QWY_001 | 2QWY | 0.9241 | 0 | A | SAM-II riboswitch | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tSH | tHS | cWW | |||
8 | IL_1S72_021 | 1S72 | 0.8290 | 0 | AAA cross-strand stack (H) | 0 | LSU rRNA | G | 679 | G | 680 | G | 681 | A | 682 | G | 683 | * | C | 663 | U | 664 | A | 665 | A | 666 | C | 667 | cWW | tSH | ntHW | cWW | ||
9 | IL_2ZJR_012 | 2ZJR | 0.9255 | 0 | AAA cross-strand stack (H) | X | LSU rRNA | C | 629 | G | 630 | G | 631 | A | 632 | G | 633 | * | U | 616 | U | 617 | A | 618 | A | 619 | G | 620 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUAG*UGAGG | 1 |
UGGAG*CGAAA | 1 |
UUAAG*CGGAG | 1 |
UGUAG*CGAAG | 1 |
GGACG*CUAAC | 1 |
GGACG*CAAAC | 1 |
CGUAU*AAAAG | 1 |
GGGAG*CUAAC | 1 |
CGGAG*UUAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGA*UAA | 2 |
GUA*GAG | 1 |
GGA*GAA | 1 |
UAA*GGA | 1 |
GUA*GAA | 1 |
GAC*UAA | 1 |
GAC*AAA | 1 |
GUA*AAA | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_43241.1 | Only in the parent motif |
---|---|---|---|
IL_17030.2 Compare | IL_3F1H_026, IL_2ZJR_012, IL_3F1H_015, IL_3MUR_002, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_001 | IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1S72_023, IL_2QWY_007, IL_3F1H_051, IL_2ZJR_088, IL_2QWY_004 |
Children motifs
Child motif | Common motif instances | Only in IL_43241.1 | Only in the child motif |
---|---|---|---|
IL_47124.1 Compare | IL_2ZJR_012, IL_3F1H_015, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_001 | IL_3F1H_026, IL_3MUR_002 | IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1S72_023, IL_2QWY_007, IL_3F1H_051, IL_2ZJR_088 |
IL_72638.1 Compare | IL_3F1H_026, IL_3MUR_002 | IL_2ZJR_012, IL_3F1H_015, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_001 | IL_1S72_028, IL_3F1H_020, IL_3F1H_072 |
- Annotations
-
- (5)
- AAA cross-strand stack (H) (2)
- tSH-tHW-tHS (H) (1)
- Triple sheared (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.21 | Avg 0.55 | Max 0.93
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