Motif IL_43363.1 Version IL_43363.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-4 | 2-9 | 4-10 | 5-8 | 5-9 | 6-7 | 7-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_107 | 4IOA | 0.0000 | 2 | Y | 5S rRNA | C | 35 | A | 36 | C | 37 | C | 38 | C | 39 | C | 40 | * | G | 46 | C | 49 | U | 50 | G | 51 | cWW | ncSH | ncWW | ncWS | cWW | ntSW | ||
| 2 | IL_4CUX_071 | 4CUX | 0.7131 | 2 | 2 | 18S RRNA | C | 1376 | U | 1377 | U | 1378 | C | 1379 | U | 1380 | U | 1381 | * | A | 1344 | A | 1345 | A | 1348 | G | 1349 | cWW | cSH | ncWS | ncWW | ncWS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACCCC*GAACUG | 1 |
| AAAUAG*CUUCUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACCC*AACU | 1 |
| AAUA*UUCU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_43363.1 | Only in the parent motif |
|---|---|---|---|
| IL_73367.1 Compare | IL_4CUX_071 | IL_4IOA_107 | |
| IL_09587.1 Compare | IL_4IOA_107 | IL_4CUX_071 | IL_2AW7_053 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-L-L-L-cWW
- Heat map statistics
- Min 0.71 | Avg 0.36 | Max 0.71
Coloring options: