Motif IL_43933.1 Version IL_43933.1 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-3 | 1-9 | 2-3 | 2-8 | 3-7 | 4-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_025 | 3U5F | 0.0000 | 1 | 6 | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | cWW | ||
| 2 | IL_3U5H_068 | 3U5H | 0.9566 | 1 | 5 | LSU rRNA | G | 1500 | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | C | 1516 | cWW | ncSH | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAUC*GGAG | 1 |
| GUCAAC*GGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAU*GA | 1 |
| UCAA*GA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_43933.1 | Only in the parent motif |
|---|---|---|---|
| IL_91513.1 Compare | IL_3U5H_068 | IL_3U5F_025 | |
| IL_44742.1 Compare | IL_3U5F_025 | IL_3U5H_068 | IL_3U5F_052 |
Children motifs
| Child motif | Common motif instances | Only in IL_43933.1 | Only in the child motif |
|---|---|---|---|
| IL_07300.1 Compare | IL_3U5F_025 | IL_3U5H_068 | IL_3U5F_052 |
| IL_06471.1 Compare | IL_3U5H_068 | IL_3U5F_025 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-L-L-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
Coloring options: