#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13 141-142-133-123-134-115-95-106-97-8
1 IL_1S72_0011S720.15070 0 LSU rRNAG21U22G23G24A25U26U27*A516U517G518A519A520A521U522cWWtSHtSHtHScWwcWW
2 IL_3U5H_0163U5H0.13660 8+55.8S rRNAA13C14G15G16A17U18C19*G404U405G406A407A408A409U410cWWntSHtSHncSWtSHntHScWwcWW
3 IL_3V2F_0013V2F0.00000 A23S Ribosomal RNAG24U25G26G27A28U29G30*C510U511G512A513A514A515C516cWWtSHtSHtHScWwcWW
4 IL_2QBG_0062QBG0.08710 B23S rRNAG24U25G26G27A28U29G30*C510U511G512A513A514A515C516cWWntSHtSHncSWtSHtHScWwcWW
5 IL_2ZJR_0012ZJR0.14780 X LSU rRNAG24U25G26G27A28U29G30*C520U521G522A523A524A525C526cWWtSHtSHcWwcWW
6 IL_2XZM_0382XZM0.95000 A18S RRNAG715G716G717A718G719U720A721*U680G681C682A683A684A685C686ncWWncwW

3D structures

Complete motif including flanking bases
SequenceCounts
GUGGAUG*CUGAAAC3
GUGGAUU*AUGAAAU1
ACGGAUC*GUGAAAU1
UGCAAAC*GGGAGUA1
Non-Watson-Crick part of the motif
SequenceCounts
UGGAU*UGAAA4
CGGAU*UGAAA1
GCAAA*GGAGU1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_44067.2Only in the parent motif
IL_44067.1
Compare
IL_2XZM_038, IL_2ZJR_001, IL_1S72_001, IL_3U5H_016, IL_2QBG_006IL_3V2F_001IL_3UXR_001

Children motifs

Child motifCommon motif instancesOnly in IL_44067.2Only in the child motif
IL_44067.3
Compare
IL_2XZM_038, IL_2QBG_006, IL_1S72_001, IL_3U5H_016, IL_3V2F_001IL_2ZJR_001IL_4IOA_001
Annotations
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Heat map statistics
Min 0.09 | Avg 0.35 | Max 0.99
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