Motif IL_44465.1 Version IL_44465.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5UNE_009 | 5UNE | 0.2169 | 0 | Isolated non-canonical cWW contact | A+B | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWW | |
| 2 | IL_5UNE_001 | 5UNE | 0.1912 | 0 | Isolated non-canonical cWW contact | B+A | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWw | cWW |
| 3 | IL_1SI3_001 | 1SI3 | 0.0849 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 4 | IL_1SI2_002 | 1SI2 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 5 | IL_8P9A_408 | 8P9A | 0.1477 | 0 | Isolated non-canonical cWW pair (H) | sR | SSU rRNA | C | 686 | G | 687 | G | 688 | * | C | 646 | G | 647 | G | 648 | cWW | cWW | |
| 6 | IL_8P9A_384 | 8P9A | 0.1743 | 0 | Isolated non-canonical cWW contact (H) | sR | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 7 | IL_7LYF_002 | 7LYF | 0.2070 | 0 | Isolated non-canonical cWW pair | A | Dengue virus SLA | C | 84 | A | 85 | A | 86 | * | U | 46 | G | 47 | G | 48 | ncWW | ncWW | cWW |
| 8 | IL_9DFE_023 | 9DFE | 0.6390 | 1 | Other IL | 1A | LSU rRNA | G | 931 | A | 933 | G | 934 | * | C | 844 | G | 845 | C | 846 | cWW | cWW | |
| 9 | IL_7ZO1_011 | 7ZO1 | 0.6152 | 0 | A+C | tracrRNA + CD34 off-target9 DNA target strand | G | 16 | U | 17 | A | 18 | * | DT | 3 | DT | 4 | DC | 5 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UGA | 2 |
| UGA*UGA | 2 |
| CGG*CGG | 1 |
| UGU*AGA | 1 |
| CAA*UGG | 1 |
| GGAG*CGC | 1 |
| GUA*TTC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 6 |
| A*G | 1 |
| GA*G | 1 |
| U*T | 1 |
- Annotations
-
- Isolated non-canonical cWW contact (4)
- Isolated non-canonical cWW pair (1)
- (1)
- Isolated non-canonical cWW contact (H) (1)
- Isolated non-canonical cWW pair (H) (1)
- Other IL (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.34 | Max 0.68
Coloring options: