#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3break 4 51-21-52-53-4
1 IL_4A1B_0494A1B0.593011G1039C1041U1042*A1062C1063cWWcWW
2 IL_1X8W_0041X8W0.60300AG129U130U131*A192C193ncSHcWWcWW
3 IL_3IWN_0013IWN0.48470Minor groove platformAG89A90U91*A2C3ncWWcWW
4 IL_4A1B_1284A1B0.440401U3338C3339U3340*A3281A3282cWWcWW
5 IL_2ZJR_0032ZJR0.36730Minor groove platform (H)XU447C448C449*G42A43ncSHcWWcWW
6 IL_3U5H_0413U5H0.279805U1050U1051U1052*A997A998cWWtHScWW
7 IL_3U5F_0293U5F0.227106A518C519A520*U532U533cWWntHScWW
8 IL_1U6B_0071U6B0.23160Minor groove platformBG128A129G130*C177C178cSHcWWtHScWW
9 IL_1Y0Q_0031Y0Q0.17870Minor groove platformAA120C121G122*C192U193cWWntHScWW
10 IL_2ZJR_0272ZJR0.00000Minor groove platform (H)XU925C926C927*G875A876ncSHcWWcWW
11 IL_1S72_0351S720.15540Minor groove platform (H)0U1009C1010C1011*G956A957cSHcWWcWW
12 IL_3V2F_0283V2F0.17790AU913C914C915*G862A863cSHcWWcWW
13 IL_2QBG_0082QBG0.26960BU434C435C436*G43A44cSHcWWcWW
14 IL_2QBG_0812QBG0.28841BU2438C2440U2441*A2070A2071cSHcWWcWW
15 IL_3U5H_0993U5H0.311515U2807C2809C2810*G2412A2413cSHcWWcWW
16 IL_4A1B_0964A1B0.295711U2795C2797C2798*G2407A2408cSHcWWcWW
17 IL_3V2F_0783V2F0.27261AU2438C2440C2441*G2070A2071cSHcWWcWW
18 IL_1S72_0751S720.26451Minor groove platform (H)0U2473C2475C2476*G2111A2112cSHcWWcWW
19 IL_2ZJR_0772ZJR0.29111Minor groove platform (H)XU2417C2419C2420*G2053A2054cSHcWWcWW
20 IL_1FJG_0381FJG0.21030Minor groove platform (H)AC1226A1227C1228*G953G954cWWntHScWW
21 IL_2XZM_0612XZM0.26030AC1430A1431C1432*G1150G1151cWWntHScWW
22 IL_2AW7_0452AW70.28060AC1226A1227C1228*G953G954cWWntHScWW
23 IL_2QWY_0062QWY0.39330BU40A41G42*C23A24cWWcWW
24 IL_2GDI_0072GDI0.47420YC23C24U25*A35G36ncSHcWWcWW
25 IL_2GDI_0032GDI0.43010Minor groove platformXC23C24U25*A35G36ncSHcWWcWW
26 IL_1S72_0331S720.60030Single bulged A (H)0U942A943G944*C1023G1024ncSHcWWcWW
27 IL_3RW6_0013RW60.51641Minor groove platformHU53A55U56*A7A8ncSHcWWcWW
28 IL_2AW7_0352AW70.46110AA746A747G748*C658U659cWWcWW
29 IL_1FJG_0511FJG0.61920Not an internal loop (H)AG1274A1275G1276*C1259C1260ntHScWW
30 IL_2XZM_0702XZM0.41860AC1278U1279G1280*C1289G1290ncSHcWWtHScWW
31 IL_3U5F_0713U5F0.390506C1306U1307G1308*C1317G1318cSHcWWtHScWW
32 IL_3V2F_0703V2F0.48261AG1846A1848G1849*C1893C1894cWWncWScWW
33 IL_2AW7_0672AW70.37720AU1440A1441G1442*C1460G1461cWWtHScWW
34 IL_2QWY_0032QWY0.30650AU40A41G42*C23A24cWWtHScWW
35 IL_4A1B_0204A1B0.288501C470A471C472*G506G507ncWWntHScWW
36 IL_2XZM_0052XZM0.38320AC49A50U51*A420G421cWWtHScWW
37 IL_3U5F_0053U5F0.439306C50A51U52*A428G429cWWtHScWW
38 IL_1FJG_0041FJG0.48920Minor groove platform (H)AC54A55U56*A356G357cWWtHScWW
39 IL_2AW7_0042AW70.50310AC54A55U56*A356G357cWWtHScWW
40 IL_1FJG_0521FJG0.52560AC1260A1261C1262*G1273G1274tHScWW
41 IL_2AW7_0502AW70.56192AU1199U1202C1203*G1057G1058cWWtHScWW
42 IL_1FJG_0421FJG0.59192Minor groove platform (H)AU1199G1202C1203*G1057G1058cWWtHScWW
43 IL_3U5F_0623U5F0.560806C1459A1460C1461*G1178G1179cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GG6
UCC*GA5
UACC*GA5
CAU*AG4
GAG*CC2
UAG*CA2
CCU*AG2
UAG*CG2
CUG*CG2
GACU*AC1
GUU*AC1
GAU*AC1
UCU*AA1
UUU*AA1
ACA*UU1
ACG*CU1
UACU*AA1
UAAU*AA1
AAG*CU1
GAAG*CC1
UCAUC*GG1
UCAGC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
A*18
C*10
AC*7
U*4
AA*2
CAU*1
CAG*1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_44540.2Only in the child motif
IL_44540.3
Compare
IL_2QBG_081, IL_2AW7_050, IL_1FJG_004, IL_3V2F_028, IL_2QBG_008, IL_2AW7_004, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_2AW7_035, IL_2GDI_003, IL_3U5H_041, IL_3U5F_062, IL_3U5F_005, IL_2XZM_070, IL_3IWN_001, IL_1U6B_007, IL_3V2F_078, IL_1X8W_004, IL_2AW7_045, IL_3U5F_029, IL_3V2F_070, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_4A1B_020, IL_1FJG_052, IL_1FJG_051, IL_1S72_075, IL_3RW6_001, IL_2XZM_061, IL_2XZM_005, IL_1S72_033, IL_1FJG_038, IL_3U5F_071, IL_1S72_035, IL_1Y0Q_003, IL_4A1B_096, IL_3U5H_099IL_2ZJR_003, IL_2ZJR_027, IL_2ZJR_077IL_4IOA_076, IL_4IOA_027, IL_4IOA_003
Annotations
  • (28)
  • Minor groove platform (H) (8)
  • Minor groove platform (5)
  • Not an internal loop (H) (1)
  • Single bulged A (H) (1)
  • Basepair signature
    cWW-cSH-tHS-cWW
    Heat map statistics
    Min 0.05 | Avg 0.50 | Max 1.00
    Help

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