Motif IL_45262.2 Version IL_45262.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_048 | 2XZM | 0.4333 | 0 | A | 18S RRNA | G | 963 | G | 964 | G | 965 | A | 966 | U | 967 | C | 968 | * | G | 992 | U | 993 | C | 994 | cWW | ncWw | cWW | |
| 2 | IL_2QBG_062 | 2QBG | 0.1174 | 0 | B | 23S rRNA | G | 1651 | A | 1652 | G | 1653 | A | 1654 | A | 1655 | C | 1656 | * | G | 2004 | A | 2005 | C | 2006 | cWW | tHS | cWW | |
| 3 | IL_2ZJR_060 | 2ZJR | 0.0000 | 0 | X | LSU rRNA | G | 1668 | A | 1669 | G | 1670 | A | 1671 | A | 1672 | C | 1673 | * | G | 1987 | A | 1988 | C | 1989 | cWW | tHS | cWW | |
| 4 | IL_3V2F_061 | 3V2F | 0.0828 | 0 | A | 23S Ribosomal RNA | G | 1651 | A | 1652 | G | 1653 | A | 1654 | A | 1655 | C | 1656 | * | G | 2004 | A | 2005 | C | 2006 | cWW | tHS | cWW | |
| 5 | IL_1S72_059 | 1S72 | 0.2524 | 1 | 0 | LSU rRNA | G | 1728 | A | 1729 | C | 1731 | A | 1732 | A | 1733 | C | 1734 | * | G | 2045 | G | 2046 | C | 2047 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAAC*GAC | 3 |
| GGGAUC*GUC | 1 |
| GAGCAAC*GGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*A | 3 |
| GGAU*U | 1 |
| AGCAA*G | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_45262.2 | Only in the parent motif |
|---|---|---|---|
| IL_45262.1 Compare | IL_2XZM_048, IL_2QBG_062, IL_1S72_059, IL_2ZJR_060 | IL_3V2F_061 | IL_3UXR_061 |
Children motifs
| Child motif | Common motif instances | Only in IL_45262.2 | Only in the child motif |
|---|---|---|---|
| IL_45262.3 Compare | IL_3V2F_061, IL_2XZM_048, IL_2QBG_062, IL_1S72_059 | IL_2ZJR_060 | IL_4IOA_062 |
- Annotations
- Basepair signature
- cWW-L-L-L-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.24 | Max 0.53
Coloring options: