#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3break 4 5 6 7 81-82-53-4
1 IL_1FJG_0631FJG0.88181A SSU rRNAC1459A1460G1461*C1440G1441G1442A1446G1447cWWtHScWW
2 IL_4BPP_0194BPP0.00001A18S RRNAG354A355G356*C367G368A369U370C372cWWcWW
3 IL_3U5F_0213U5F0.13611618S rRNAG363G364G365*C376G377A378U379C381cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CGGGAG1
GAG*CGAUUC1
GGG*CGAUUC1
Non-Watson-Crick part of the motif
SequenceCounts
A*GGGA1
A*GAUU1
G*GAUU1

Release history

Release1.91.101.11
Date2013-12-072014-01-042014-02-01
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_46034.2Only in the parent motif
IL_46034.1
Compare
IL_3U5F_021, IL_4BPP_019IL_1FJG_063
IL_95150.4
Compare
IL_1FJG_063IL_3U5F_021, IL_4BPP_019IL_3OWZ_006, IL_3OWZ_002

Children motifs

Child motifCommon motif instancesOnly in IL_46034.2Only in the child motif
IL_46034.3
Compare
IL_3U5F_021, IL_4BPP_019IL_1FJG_063
IL_95150.6
Compare
IL_1FJG_063IL_3U5F_021, IL_4BPP_019IL_3OWZ_006, IL_3OWZ_002
Annotations
  • (3)
  • Basepair signature
    cWW-R-R-tHS-cWW
    Heat map statistics
    Min 0.14 | Avg 0.43 | Max 0.90
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