Motif IL_46034.2 Version IL_46034.2 of this group appears in releases 1.9 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_063 | 1FJG | 0.8818 | 1 | A | SSU rRNA | C | 1459 | A | 1460 | G | 1461 | * | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | cWW | tHS | cWW |
2 | IL_4BPP_019 | 4BPP | 0.0000 | 1 | A | 18S RRNA | G | 354 | A | 355 | G | 356 | * | C | 367 | G | 368 | A | 369 | U | 370 | C | 372 | cWW | cWW | |
3 | IL_3U5F_021 | 3U5F | 0.1361 | 1 | 6 | 18S rRNA | G | 363 | G | 364 | G | 365 | * | C | 376 | G | 377 | A | 378 | U | 379 | C | 381 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAG*CGGGAG | 1 |
GAG*CGAUUC | 1 |
GGG*CGAUUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*GGGA | 1 |
A*GAUU | 1 |
G*GAUU | 1 |
Release history
Release | 1.9 | 1.10 | 1.11 |
---|---|---|---|
Date | 2013-12-07 | 2014-01-04 | 2014-02-01 |
Status | Updated, 2 parents | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_46034.2 | Only in the parent motif |
---|---|---|---|
IL_46034.1 Compare | IL_3U5F_021, IL_4BPP_019 | IL_1FJG_063 | |
IL_95150.4 Compare | IL_1FJG_063 | IL_3U5F_021, IL_4BPP_019 | IL_3OWZ_006, IL_3OWZ_002 |
Children motifs
Child motif | Common motif instances | Only in IL_46034.2 | Only in the child motif |
---|---|---|---|
IL_46034.3 Compare | IL_3U5F_021, IL_4BPP_019 | IL_1FJG_063 | |
IL_95150.6 Compare | IL_1FJG_063 | IL_3U5F_021, IL_4BPP_019 | IL_3OWZ_006, IL_3OWZ_002 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.43 | Max 0.90
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