Motif IL_46174.1 Version IL_46174.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-5 | 1-12 | 2-3 | 2-11 | 4-11 | 5-9 | 6-10 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_123 | 6CZR | 0.1690 | 2 | Kink-turn with non-sequential stacking | 1a | SSU rRNA | C | 273 | G | 274 | A | 275 | G | 277 | A | 278 | C | 279 | G | 280 | * | C | 238 | A | 239 | C | 241 | A | 242 | G | 243 | cWW | ntsS | tSH | tHW | cwW | cWW | ||
| 2 | IL_4LFB_011 | 4LFB | 0.1497 | 2 | Kink-turn with non-sequential stacking | A | SSU rRNA | C | 277 | G | 278 | A | 279 | G | 281 | A | 282 | C | 283 | G | 284 | * | C | 242 | A | 243 | C | 245 | A | 246 | G | 247 | ncsS | cWW | ntsS | tSH | tHW | cwW | cWW | |
| 3 | IL_5J7L_014 | 5J7L | 0.1275 | 2 | Kink-turn with non-sequential stacking | AA | SSU rRNA | C | 277 | G | 278 | A | 279 | G | 281 | A | 282 | U | 283 | C | 284 | * | G | 242 | A | 243 | U | 245 | A | 246 | G | 247 | ncsS | cWW | ncSH | tSH | tHW | cWw | cWW | |
| 4 | IL_8C3A_410 | 8C3A | 0.0000 | 2 | Kink-turn with non-sequential stacking | CM | SSU rRNA | U | 346 | U | 347 | U | 348 | A | 350 | A | 351 | C | 352 | G | 353 | * | U | 309 | A | 310 | C | 312 | A | 313 | A | 314 | ncsS | cWW | tsS | ntSH | tHW | cwW | cWW | |
| 5 | IL_8P9A_391 | 8P9A | 0.0532 | 2 | Kink-turn with non-sequential stacking (H) | sR | SSU rRNA | U | 348 | U | 349 | U | 350 | A | 352 | A | 353 | C | 354 | G | 355 | * | U | 311 | A | 312 | C | 314 | A | 315 | A | 316 | csS | cWW | tsS | ntSH | tHW | cwW | cWW | |
| 6 | IL_3RW6_002 | 3RW6 | 0.2770 | 4 | Kink-turn with non-sequential stacking | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | C | 43 | A | 44 | A | 45 | G | 47 | A | 48 | C | 49 | G | 50 | * | U | 11 | A | 12 | C | 16 | A | 17 | G | 18 | ncsS | cWW | tsS | tSH | tHW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACGACG*CAUCAG | 2 |
| UUUCAACG*UAUCAA | 2 |
| CGACGAUC*GAUUAG | 1 |
| CAAUGACG*UAAGACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACGAC*AUCA | 2 |
| UUCAAC*AUCA | 2 |
| GACGAU*AUUA | 1 |
| AAUGAC*AAGACA | 1 |
- Annotations
-
- Kink-turn with non-sequential stacking (5)
- Kink-turn with non-sequential stacking (H) (1)
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.16 | Max 0.31
Coloring options: