Motif IL_46301.1 Version IL_46301.1 of this group appears in releases 1.10 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNQ_002 | 3BNQ | 0.8986 | 0 | A+B | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | A | 18 | G | 19 | cWW | cwW | ncBW | cWW |
| 2 | IL_2AW7_010 | 2AW7 | 0.7548 | 0 | A | 16S ribosomal RNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | cWW | cWw | cWW | |
| 3 | IL_1FJG_008 | 1FJG | 0.7981 | 0 | A | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | cWW | cWw | cWW | |
| 4 | IL_2QBG_108 | 2QBG | 0.7835 | 0 | B | 23S rRNA | G | 2843 | G | 2844 | U | 2845 | G | 2846 | * | C | 2870 | U | 2871 | A | 2872 | A | 2873 | C | 2874 | cWW | cWw | cWW | |
| 5 | IL_1NUV_003 | 1NUV | 0.0211 | 1 | F+E | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | cWW | ncWW | cWW | |
| 6 | IL_1NUV_002 | 1NUV | 0.0000 | 1 | D+C | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | cWW | ncWW | cWW | |
| 7 | IL_429D_002 | 429D | 0.0875 | 1 | D+C | RNA (11-mer) | G | 143 | G | 144 | A | 145 | G | 146 | * | C | 122 | C | 123 | A | 125 | G | 126 | C | 127 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CCGAGC | 3 |
| CACC*GCAAG | 1 |
| GAUG*CUGCC | 1 |
| GAUG*CUACC | 1 |
| GGUG*CUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*CGAG | 3 |
| AC*CAA | 1 |
| AU*UGC | 1 |
| AU*UAC | 1 |
| GU*UAA | 1 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | > 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_46301.1 | Only in the parent motif |
|---|---|---|---|
| IL_09348.6 Compare | IL_1NUV_002, IL_2QBG_108 | IL_3BNQ_002, IL_2AW7_010, IL_429D_002, IL_1FJG_008, IL_1NUV_003 | IL_4A1B_070 |
| IL_71288.1 Compare | IL_429D_002, IL_1NUV_003 | IL_3BNQ_002, IL_1NUV_002, IL_1FJG_008, IL_2AW7_010, IL_2QBG_108 | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 |
| IL_83451.3 Compare | IL_2AW7_010, IL_1FJG_008 | IL_3BNQ_002, IL_1NUV_002, IL_429D_002, IL_1NUV_003, IL_2QBG_108 | IL_3CUN_001, IL_4BPP_081, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061 |
| IL_31555.4 Compare | IL_3BNQ_002 | IL_1NUV_003, IL_1NUV_002, IL_429D_002, IL_2QBG_108, IL_2AW7_010, IL_1FJG_008 | IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 |
Children motifs
| Child motif | Common motif instances | Only in IL_46301.1 | Only in the child motif |
|---|---|---|---|
| IL_65554.1 Compare | IL_2AW7_010, IL_1FJG_008 | IL_3BNQ_002, IL_1NUV_002, IL_429D_002, IL_1NUV_003, IL_2QBG_108 | IL_4BPP_081, IL_3U5F_081, IL_2AW7_061, IL_3CUN_001, IL_1VW3_071, IL_1FJG_055 |
| IL_43545.1 Compare | IL_1NUV_002, IL_2QBG_108 | IL_3BNQ_002, IL_2AW7_010, IL_429D_002, IL_1FJG_008, IL_1NUV_003 | |
| IL_82133.1 Compare | IL_1NUV_003, IL_429D_002 | IL_3BNQ_002, IL_1NUV_002, IL_1FJG_008, IL_2AW7_010, IL_2QBG_108 | IL_2FQN_003, IL_2OE5_002, IL_4NVV_105 |
| IL_31555.6 Compare | IL_3BNQ_002 | IL_1NUV_003, IL_1NUV_002, IL_429D_002, IL_2QBG_108, IL_2AW7_010, IL_1FJG_008 | IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 |
- Annotations
-
- (7)
- Basepair signature
- cWW-L-R-R-cWW-cWW
- Heat map statistics
- Min 0.02 | Avg 0.54 | Max 0.91
Coloring options: