Motif IL_46435.1 Version IL_46435.1 of this group appears in releases 0.6 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VBY_001 | 1VBY | 0.0000 | 0 | B | Hepatitis Delta virus ribozyme | C | 107 | A | 108 | U | 109 | G | 110 | G | 111 | U | 112 | C | 113 | C | 114 | C | 115 | A | 116 | G | 117 | * | C | 130 | G | 131 | cWW | cWW | |
| 2 | IL_3NKB_001 | 3NKB | 0.9568 | 0 | A+B | DNA/RNA (5'-D(*(DUR))-D(*GP*G)-R(P*CP*UP*UP*GP*CP*A)-3') + The hepatitis delta virus ribozyme | C | 8 | A | 9 | G | 10 | G | 11 | U | 12 | C | 13 | C | 14 | G | 15 | C | 16 | A | 17 | G | 18 | * | C | 30 | G | 31 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGGUCCCAG*CG | 1 |
| CAGGUCCGCAG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGGUCCCA* | 1 |
| AGGUCCGCA* | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_46435.1 | Only in the parent motif |
|---|---|---|---|
| IL_82472.1 Compare | IL_1VBY_001 | IL_3NKB_001 |
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-L-L-L-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
Coloring options: