Motif IL_47067.1 Version IL_47067.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_076 | 1S72 | 0.2908 | 1 | Isolated tHS basepair with bulges (H) | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW |
| 2 | IL_1S72_078 | 1S72 | 0.2160 | 2 | 0 | LSU rRNA | C | 2331 | A | 2332 | G | 2333 | * | C | 2351 | G | 2352 | G | 2355 | cWW | tHS | cWW | |
| 3 | IL_2ZJR_081 | 2ZJR | 0.0000 | 2 | Isolated tHS basepair with bulges (H) | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | G | 2300 | cWW | ntHS | cWW |
| 4 | IL_3O58_116 | 3O58 | 0.2100 | 0 | 1 | 25S ribosomal RNA | G | 2440 | A | 2441 | G | 2442 | * | U | 2505 | U | 2506 | C | 2507 | cWW | ncWW | ||
| 5 | IL_2QBG_082 | 2QBG | 0.2332 | 1 | B | 23S rRNA | U | 2081 | A | 2082 | G | 2083 | * | U | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 6 | IL_3PYO_074 | 3PYO | 0.3553 | 1 | A | 23S ribosomal RNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 7 | IL_3PYO_011 | 3PYO | 0.4078 | 1 | A | 23S ribosomal RNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW | |
| 8 | IL_2ZJR_078 | 2ZJR | 0.3826 | 1 | Isolated tHS basepair with bulges (H) | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | ntHS | cWW |
| 9 | IL_3PYO_076 | 3PYO | 0.7774 | 2 | A | 23S ribosomal RNA | C | 2297 | A | 2298 | G | 2299 | * | C | 2317 | G | 2318 | G | 2321 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGGG | 2 |
| CAG*CGAAG | 1 |
| CAA*UGUAG | 1 |
| GAG*UUC | 1 |
| UAG*UGGG | 1 |
| CAG*UGGG | 1 |
| UAG*CGGG | 1 |
| CAG*CGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 5 |
| A*GAA | 1 |
| A*GUA | 1 |
| A*U | 1 |
| A*GGA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_47067.1 | Only in the parent motif |
|---|---|---|---|
| IL_65962.2 Compare | IL_1S72_076, IL_2ZJR_078 | IL_3PYO_074, IL_3PYO_076, IL_3O58_116, IL_2ZJR_081, IL_1S72_078, IL_3PYO_011, IL_2QBG_082 | IL_1L9A_004, IL_3F1H_079, IL_3F1H_011 |
| IL_73059.1 Compare | IL_2ZJR_081, IL_1S72_078 | IL_3PYO_074, IL_3PYO_076, IL_3O58_116, IL_2ZJR_078, IL_3PYO_011, IL_1S72_076, IL_2QBG_082 | IL_1NTB_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_47067.1 | Only in the child motif |
|---|---|---|---|
| IL_48187.1 Compare | IL_1S72_076, IL_2ZJR_081, IL_2QBG_082, IL_1S72_078, IL_2ZJR_078 | IL_3O58_116, IL_3PYO_074, IL_3PYO_076, IL_3PYO_011 | IL_3UXR_012, IL_3U5H_104, IL_3U5H_100, IL_3UXR_086, IL_3UXR_079, IL_4A1B_102 |
- Annotations
-
- (6)
- Isolated tHS basepair with bulges (H) (3)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.35 | Max 0.84
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