Motif IL_47648.1 Version IL_47648.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_056 | 1S72 | 0.0000 | 2 | tSH-tHH-tHS (H) | 0 | LSU rRNA | C | 1570 | G | 1571 | A | 1572 | C | 1574 | * | G | 1622 | C | 1623 | A | 1624 | A | 1626 | G | 1627 | cWW | tSH | tHH | cWW |
| 2 | IL_2ZJR_008 | 2ZJR | 1.2125 | 1 | X | LSU rRNA | C | 303 | A | 304 | A | 305 | G | 306 | * | C | 354 | G | 355 | A | 356 | A | 357 | G | 359 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAC*GCAUAG | 1 |
| CAAG*CGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*CAUA | 1 |
| AA*GAAC | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_47648.1 | Only in the child motif |
|---|---|---|---|
| IL_90498.1 Compare | IL_1S72_056 | IL_2ZJR_008 | |
| IL_22579.1 Compare | IL_2ZJR_008 | IL_1S72_056 |
- Annotations
-
- tSH-tHH-tHS (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 1.21 | Avg 0.61 | Max 1.21
Coloring options: