Motif IL_47875.1 Version IL_47875.1 of this group appears in releases 1.12 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_022 | 1FJG | 0.1021 | 5 | A | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW |
| 2 | IL_2AW7_029 | 2AW7 | 0.0000 | 5 | A | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW |
| 3 | IL_3U5F_086 | 3U5F | 0.6222 | 1 | 6 | SSU rRNA | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAAG*CG | 2 |
| UUG*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAA* | 2 |
| U* | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_47875.1 | Only in the parent motif |
|---|---|---|---|
| IL_74214.1 Compare | IL_1FJG_022 | IL_2AW7_029, IL_3U5F_086 | IL_4IOA_094 |
| IL_92109.2 Compare | IL_2AW7_029 | IL_3U5F_086, IL_1FJG_022 | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092, IL_4IOA_024 |
| IL_47475.1 Compare | IL_3U5F_086 | IL_2AW7_029, IL_1FJG_022 | IL_1S72_093 |
Children motifs
| Child motif | Common motif instances | Only in IL_47875.1 | Only in the child motif |
|---|---|---|---|
| IL_08763.1 Compare | IL_2AW7_029, IL_1FJG_022 | IL_3U5F_086 | IL_2OZB_001, IL_3U5H_046 |
| IL_95908.1 Compare | IL_3U5F_086 | IL_2AW7_029, IL_1FJG_022 | IL_4NVV_102, IL_4IOA_099 |
Coloring options: