Motif IL_47950.3 Version IL_47950.3 of this group appears in releases 0.3 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-4 | 1-7 | 2-3 | 2-5 | 2-6 | 3-5 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_013 | 1FJG | 0.0000 | 0 | C-loop (H) | A | SSU rRNA | G | 292 | G | 293 | * | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | cWW | cWW | ntSH | ||||
| 2 | IL_1FJG_047 | 1FJG | 0.8419 | 0 | Minor groove platform (H) | A | SSU rRNA | G | 1142 | G | 1143 | * | C | 1128 | C | 1129 | A | 1130 | G | 1131 | C | 1132 | cWW | cWW | ncSW | ncSH | |||
| 3 | IL_1FJG_015 | 1FJG | 0.7629 | 0 | C-loop (H) | A | SSU rRNA | A | 389 | C | 390 | * | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | tHW | cWW | cWW | cSW | |||
| 4 | IL_2ZJR_047 | 2ZJR | 0.8678 | 1 | C-loop (H) | X | LSU rRNA | C | 1344 | C | 1346 | * | G | 1332 | G | 1333 | A | 1334 | A | 1335 | G | 1336 | cWW | cWW | ncSW | ||||
| 5 | IL_2ZJR_096 | 2ZJR | 0.8908 | 1 | C-loop (H) | X | LSU rRNA | A | 2705 | G | 2707 | * | C | 2659 | C | 2660 | G | 2661 | C | 2662 | U | 2663 | tHW | cWW | cWW | cSW | ncSH | ||
| 6 | IL_3F1H_049 | 3F1H | 1.3303 | 1 | A | LSU rRNA | A | 1331 | C | 1333 | * | G | 1319 | C | 1320 | A | 1321 | A | 1322 | U | 1323 | tHW | cWW | cWW | cSW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UGGCC | 1 |
| GG*CCAGC | 1 |
| AC*GCAAU | 1 |
| CGC*GGAAG | 1 |
| AUG*CCGCU | 1 |
| AGC*GCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GGC | 1 |
| *CAG | 1 |
| *CAA | 1 |
| G*GAA | 1 |
| U*CGC | 1 |
| G*CAA | 1 |
Release history
| Release | 0.3 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_47950.3 | Only in the parent motif |
|---|---|---|---|
| IL_47950.2 Compare | IL_2ZJR_047, IL_1FJG_015, IL_1FJG_013, IL_2ZJR_096, IL_3F1H_049, IL_1FJG_047 | IL_1S72_091, IL_3F1H_101, IL_1S72_051 |
Children motifs
| Child motif | Common motif instances | Only in IL_47950.3 | Only in the child motif |
|---|---|---|---|
| IL_36906.1 Compare | IL_1FJG_015, IL_2ZJR_096, IL_1FJG_047 | IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013 | IL_1S72_091, IL_3F1H_101 |
| IL_45778.1 Compare | IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013 | IL_1FJG_015, IL_2ZJR_096, IL_1FJG_047 | IL_1S72_051 |
- Annotations
-
- C-loop (H) (4)
- Minor groove platform (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.26 | Avg 0.59 | Max 1.33
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