#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 5 6 71-41-72-32-52-63-54-6
1 IL_1FJG_0131FJG0.00000C-loop (H)A SSU rRNAG292G293*U304G305G306C307C308cWWcWWntSH
2 IL_1FJG_0471FJG0.84190Minor groove platform (H)A SSU rRNAG1142G1143*C1128C1129A1130G1131C1132cWWcWWncSWncSH
3 IL_1FJG_0151FJG0.76290C-loop (H)A SSU rRNAA389C390*G371C372A373A374U375tHWcWWcWWcSW
4 IL_2ZJR_0472ZJR0.86781C-loop (H)X LSU rRNAC1344C1346*G1332G1333A1334A1335G1336cWWcWWncSW
5 IL_2ZJR_0962ZJR0.89081C-loop (H)X LSU rRNAA2705G2707*C2659C2660G2661C2662U2663tHWcWWcWWcSWncSH
6 IL_3F1H_0493F1H1.33031A23S RRNAA1331C1333*G1319C1320A1321A1322U1323tHWcWWcWWcSWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
GG*UGGCC1
GG*CCAGC1
AC*GCAAU1
CGC*GGAAG1
AUG*CCGCU1
GCAAU*AGC1
Non-Watson-Crick part of the motif
SequenceCounts
*GGC1
*CAG1
*CAA1
G*GAA1
U*CGC1
CAA*G1

Release history

Release0.3
Date2011-12-08
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_47950.3Only in the parent motif
IL_47950.2
Compare
IL_2ZJR_047, IL_1FJG_015, IL_1FJG_013, IL_2ZJR_096, IL_3F1H_049, IL_1FJG_047IL_1S72_091, IL_3F1H_101, IL_1S72_051

Children motifs

Child motifCommon motif instancesOnly in IL_47950.3Only in the child motif
IL_36906.1
Compare
IL_1FJG_015, IL_2ZJR_096, IL_1FJG_047IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013IL_1S72_091, IL_3F1H_101
IL_45778.1
Compare
IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013IL_1FJG_015, IL_2ZJR_096, IL_1FJG_047IL_1S72_051
Annotations
  • C-loop (H) (4)
  • Minor groove platform (H) (1)
  • (1)
  • Basepair signature
    Heat map statistics
    Min 0.26 | Avg 0.59 | Max 1.33
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